PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

SBP

Protein Properties

Length: 256aa MW: 29572.2 Da PI: 10.0901

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10011728m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	134.4	3.7e-42	134	209	2	77
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv++C+adl+eak+yhrrhkvCevh+ka++v+++g++qrfCqqCsrfhel efDe+krsCrrrLa+hnerrrk++ Thhalv10011728m 134 CQVDRCTADLKEAKQYHRRHKVCEVHAKASSVFLAGISQRFCQQCSRFHELLEFDEAKRSCRRRLAGHNERRRKSS 209 **************************************************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	4.3E-33	129	195	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.12	131	208	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.92E-38	133	212	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	8.8E-32	134	207	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MHLFHQRSIQ EHSGPYPDFS SPFKHFKRLQ FLQQYHQVPF LNIAKPTRGS FLQESYAQDY 60 NLKAFPLSKM EGRRTQGQGY LKNKASVSYL VEEEMENDMD ENEEGGREEE KRKGVMDRVR 120 GSSGISDRGT SRLCQVDRCT ADLKEAKQYH RRHKVCEVHA KASSVFLAGI SQRFCQQCSR 180 FHELLEFDEA KRSCRRRLAG HNERRRKSSG ESFGEGSGGR RGITGQMIQN QERSRVEIMT 240 TLPMSNSSFK RPQIR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-45	121	207	4	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Promotes both vegetative phase change and flowering. {ECO:0000269\|PubMed:10524240, ECO:0000269\|PubMed:16914499}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10011728m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156. {ECO:0000269\|PubMed:16914499}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353439	0.0	AK353439.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-30-M04.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010500948.1	1e-99	PREDICTED: squamosa promoter-binding-like protein 4 isoform X2
Refseq	XP_013590498.1	1e-99	PREDICTED: squamosa promoter-binding-like protein 4
Swissprot	Q9S758	1e-85	SPL5_ARATH; Squamosa promoter-binding-like protein 5
TrEMBL	V4KG13	0.0	V4KG13_EUTSA; Uncharacterized protein
STRING	XP_006392823.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM868	28	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53160.2	3e-68	squamosa promoter binding protein-like 4

Link Out ? help Back to Top
Phytozome	Thhalv10011728m
Entrez Gene	18010922

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Xu M, et al. Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana. PLoS Genet., 2016. 12(8): p. e1006263 [PMID:27541584] Ioannidi E, et al. Trichome patterning control involves TTG1 interaction with SPL transcription factors. Plant Mol. Biol., 2016. 92(6): p. 675-687 [PMID:27631431] Jung JH,Lee HJ,Ryu JY,Park CM SPL3/4/5 Integrate Developmental Aging and Photoperiodic Signals into the FT-FD Module in Arabidopsis Flowering. Mol Plant, 2016. 9(12): p. 1647-1659 [PMID:27815142]