PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10011695m
Common NameEUTSA_v10011695mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family GATA
Protein Properties Length: 300aa    MW: 32854.5 Da    PI: 6.9104
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10011695mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.98.9e-16221256134
             GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                      C++Cg  +  Tp++Rrgp+g++tLCnaCGl+++ kg
  Thhalv10011695m 221 CRHCGIGEksTPMMRRGPEGPRTLCNACGLMWANKG 256
                      ****865556***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.46777112IPR010399Tify domain
SMARTSM009792.1E-1077112IPR010399Tify domain
PfamPF062004.2E-1180111IPR010399Tify domain
PfamPF062032.1E-15145187IPR010402CCT domain
PROSITE profilePS5101712.987145187IPR010402CCT domain
PROSITE profilePS501148.893215263IPR000679Zinc finger, GATA-type
SMARTSM004013.1E-12215268IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.5E-13216279No hitNo description
Gene3DG3DSA:3.30.50.103.5E-15219262IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.86E-14220264No hitNo description
PfamPF003201.2E-13221256IPR000679Zinc finger, GATA-type
PROSITE patternPS003440221248IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MDDLHENNAR MHIGEAQDPM HVQYDHQALN HIHNGSGMVD DHADDGNAGR ISEGVETDIP  60
SHPGNITDNR GEVVDRGSDQ GDQLTLSFQG QVYVFDSVLP EKVQAVLLLL GGRELPQAPP  120
TGLGSSHQNN RGLPNTPQRF SMPQRLASLV RFREKRKGRN FDKKIRYTVR KEVALRMQRN  180
KGQFTSAKSS NDEAPSAGSS WGSNQTWAIE GSEAQNQEIS CRHCGIGEKS TPMMRRGPEG  240
PRTLCNACGL MWANKGALRD LSKGAPQTAQ NLPLHKNEDA NLEADQMMIT VASNISNSQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10011695m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1190610.0AB119061.1 Arabidopsis thaliana ZML2 mRNA for GATA-type zinc finger protein, complete cds.
GenBankAY1503950.0AY150395.1 Arabidopsis thaliana putative flowering protein CONSTANS (At1g51600) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006393030.10.0GATA transcription factor 28 isoform X2
SwissprotQ8H1G00.0GAT28_ARATH; GATA transcription factor 28
TrEMBLV4MG560.0V4MG56_EUTSA; Uncharacterized protein
STRINGXP_006393030.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36842659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.20.0ZIM-LIKE 2