PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

GATA

Protein Properties

Length: 300aa MW: 32854.5 Da PI: 6.9104

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10011695m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	48.9	8.9e-16	221	256	1	34
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 C++Cg + Tp++Rrgp+g++tLCnaCGl+++ kg Thhalv10011695m 221 CRHCGIGEksTPMMRRGPEGPRTLCNACGLMWANKG 256 **865556*********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51320	14.467	77	112	IPR010399	Tify domain
SMART	SM00979	2.1E-10	77	112	IPR010399	Tify domain
Pfam	PF06200	4.2E-11	80	111	IPR010399	Tify domain
Pfam	PF06203	2.1E-15	145	187	IPR010402	CCT domain
PROSITE profile	PS51017	12.987	145	187	IPR010402	CCT domain
PROSITE profile	PS50114	8.893	215	263	IPR000679	Zinc finger, GATA-type
SMART	SM00401	3.1E-12	215	268	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	9.5E-13	216	279	No hit	No description
Gene3D	G3DSA:3.30.50.10	3.5E-15	219	262	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	3.86E-14	220	264	No hit	No description
Pfam	PF00320	1.2E-13	221	256	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	221	248	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MDDLHENNAR MHIGEAQDPM HVQYDHQALN HIHNGSGMVD DHADDGNAGR ISEGVETDIP 60 SHPGNITDNR GEVVDRGSDQ GDQLTLSFQG QVYVFDSVLP EKVQAVLLLL GGRELPQAPP 120 TGLGSSHQNN RGLPNTPQRF SMPQRLASLV RFREKRKGRN FDKKIRYTVR KEVALRMQRN 180 KGQFTSAKSS NDEAPSAGSS WGSNQTWAIE GSEAQNQEIS CRHCGIGEKS TPMMRRGPEG 240 PRTLCNACGL MWANKGALRD LSKGAPQTAQ NLPLHKNEDA NLEADQMMIT VASNISNSQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269\|PubMed:14966217}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00198	DAP	Transfer from AT1G51600	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10011695m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB119061	0.0	AB119061.1 Arabidopsis thaliana ZML2 mRNA for GATA-type zinc finger protein, complete cds.
GenBank	AY150395	0.0	AY150395.1 Arabidopsis thaliana putative flowering protein CONSTANS (At1g51600) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006393030.1	0.0	GATA transcription factor 28 isoform X2
Swissprot	Q8H1G0	0.0	GAT28_ARATH; GATA transcription factor 28
TrEMBL	V4MG56	0.0	V4MG56_EUTSA; Uncharacterized protein
STRING	XP_006393030.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3684	26	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51600.2	0.0	ZIM-LIKE 2

Link Out ? help Back to Top
Phytozome	Thhalv10011695m
Entrez Gene	18010567