PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10011686m
Common NameEUTSA_v10011686mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB_related
Protein Properties Length: 308aa    MW: 33373.8 Da    PI: 10.0856
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10011686mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.65.1e-12555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+  l+ +v ++G+g W+tI +          R+  ++k++w++
  Thhalv10011686m  5 KQKWTQEEESALKSGVIKHGPGKWRTILKDPEfsgvlYLRSNVDLKDKWRN 55
                     79***********************************88***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.713163IPR017930Myb domain
SuperFamilySSF466898.58E-15259IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-13456IPR009057Homeodomain-like
SMARTSM007175.4E-7459IPR001005SANT/Myb domain
PfamPF002491.2E-8555IPR001005SANT/Myb domain
CDDcd116603.49E-18656No hitNo description
SMARTSM005265.6E-14122187IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467856.53E-16123202IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.8E-14124193IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150424.206124192IPR005818Linker histone H1/H5, domain H15
PfamPF005383.4E-8129185IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0033613Molecular Functionactivating transcription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0070491Molecular Functionrepressing transcription factor binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MGAPKQKWTQ EEESALKSGV IKHGPGKWRT ILKDPEFSGV LYLRSNVDLK DKWRNMSVMA  60
NGYGSREKSR LAVKRTLSLP KQDDNSLANT TSLQSDEEMG DAKHFSTTGS SALQVSATPT  120
TRRPNVRLDS LIMEAIATMK EPGGSNKTTI AAYIEEQYHA PPDFKRLLST KLKFLTGSGK  180
LVKVKRKYRI SNSTPLSSQR KRNMGSSSGK QSIHSLPSQT DGDEVSVQTR SQIDAELAKM  240
KTMSVHEAAA VAAQAVAAAE AAMAEAEEAA REAEAAEAEA EVAQAFAEEA AKTLKGRNTC  300
KVQMIRA*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00607ChIP-seqTransfer from AT1G49950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10011686m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATU836241e-160U83624.1 Arabidopsis thaliana telomere repeat binding factor 1 (TRB1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006393201.10.0telomere repeat-binding factor 1 isoform X1
RefseqXP_006393202.10.0telomere repeat-binding factor 1 isoform X1
SwissprotQ8VWK41e-147TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLV4MGS00.0V4MGS0_EUTSA; Uncharacterized protein
STRINGXP_006393200.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87222539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.31e-143telomere repeat binding factor 1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Features of Arabidopsis genes and genome discovered using full-length cDNAs.
    Plant Mol. Biol., 2006. 60(1): p. 69-85
    [PMID:16463100]
  2. Schrumpfová PP, et al.
    Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase.
    Plant J., 2014. 77(5): p. 770-81
    [PMID:24397874]
  3. Liang SC, et al.
    Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2.
    PLoS Genet., 2015. 11(12): p. e1005660
    [PMID:26642436]
  4. Fulcher N,Riha K
    Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
    Front Genet, 2015. 6: p. 349
    [PMID:26779251]
  5. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]