PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

G2-like

Protein Properties

Length: 360aa MW: 40855.3 Da PI: 7.2803

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10011605m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.1	7.4e-32	218	273	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++WtpeLH+rFv+a+++LGG+ +AtPk+i+e+m+ +gLt+++vkSHLQkYRl+ Thhalv10011605m 218 KQRRCWTPELHRRFVDALQHLGGPGVATPKQIREHMQEEGLTNDEVKSHLQKYRLH 273 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.043	215	275	IPR017930	Myb domain
SuperFamily	SSF46689	1.08E-17	216	276	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.1E-27	217	276	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.6E-27	218	273	IPR006447	Myb domain, plants
Pfam	PF00249	7.9E-9	220	271	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MGSLGDELSL GSRRHSSMPI TICGFPRKAL KIMNFVVEKG CKLEEHLKKL EEEKRKIQSS 60 ELELPLCLQI LNDAISYLKE ENKRCSEMDT QPLLKDFISL NKPTREEHDE EEWRHGDGLL 120 LKREELVKEK EFQLWRDKDH TKIKNKLEIE RSEEKSSNGL SSMLLIPRTI PKVETGLGLG 180 LTTSTMVNER RKEMASCGFT SSSTPQPPSF LQKQALRKQR RCWTPELHRR FVDALQHLGG 240 PGVATPKQIR EHMQEEGLTN DEVKSHLQKY RLHMRKPNSN PEKQSVVVLG FKLWNSSQEE 300 EETGEGGGDS SKRSNSKSDS PQGPLQLPCT TTTTGGDSSM EDAEDAKSES FQMERVRSP*

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MGSLGDELSL GSRRHSSMPI TICGFPRKAL KIMNFVVEKG CKLEEHLKKL EEEKRKIQSS  60
ELELPLCLQI LNDAISYLKE ENKRCSEMDT QPLLKDFISL NKPTREEHDE EEWRHGDGLL  120
LKREELVKEK EFQLWRDKDH TKIKNKLEIE RSEEKSSNGL SSMLLIPRTI PKVETGLGLG  180
LTTSTMVNER RKEMASCGFT SSSTPQPPSF LQKQALRKQR RCWTPELHRR FVDALQHLGG  240
PGVATPKQIR EHMQEEGLTN DEVKSHLQKY RLHMRKPNSN PEKQSVVVLG FKLWNSSQEE  300
EETGEGGGDS SKRSNSKSDS PQGPLQLPCT TTTTGGDSSM EDAEDAKSES FQMERVRSP*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250\|UniProtKB:Q9FX67}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00193	DAP	Transfer from AT1G49560	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10011605m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK221631	1e-141	AK221631.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-96-G04.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006393245.1	0.0	transcription factor HHO6
Swissprot	Q9FX84	1e-143	HHO6_ARATH; Transcription factor HHO6
TrEMBL	V4MGV8	0.0	V4MGV8_EUTSA; Uncharacterized protein
STRING	XP_006393245.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13927	18	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49560.1	1e-107	G2-like family protein

Link Out ? help Back to Top
Phytozome	Thhalv10011605m
Entrez Gene	18011288

Publications ? help Back to Top
Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098]