PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10011450m
Common NameEUTSA_v10011450mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 476aa    MW: 53054.6 Da    PI: 8.2142
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10011450mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.1e-0595117123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C+ C+k F r  nL+ H r H
  Thhalv10011450m  95 FICEVCNKGFQRDQNLQLHKRGH 117
                      89******************988 PP
2zf-C2H213.50.00021172194123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC +C+k +  +s+ k H +t+
  Thhalv10011450m 172 WKCDKCSKKYAVQSDWKAHAKTC 194
                      58******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.79E-794117No hitNo description
Gene3DG3DSA:3.30.160.604.6E-694117IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.02695117IPR015880Zinc finger, C2H2-like
PfamPF121713.6E-595117IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.82495117IPR007087Zinc finger, C2H2
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
SMARTSM00355150137167IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.8E-4160193IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.79E-7167192No hitNo description
SMARTSM00355150172192IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MMMNKDMWLH HQQQVEENMS NLTSASGDQA SVSSGNRTET SGSNFHYNIN PNQQQEQCFV  60
PQSSQKKKRN QPGNPDPEAE VMALSPKTLM ATNRFICEVC NKGFQRDQNL QLHKRGHNLP  120
WKLKQRSNKD VIRKKVYVCP EPSCVHHHPS RALGDLTGIK KHFFRKHGEK KWKCDKCSKK  180
YAVQSDWKAH AKTCGTKEYK CDCGTLFSRR DSFITHRAFC DALAEESARA IPNPILIQSS  240
SSSPSHHHQT QQNINFSSSS SSQNIISNNN LHGHEFSMKQ EESHHHHFQN IPSWLASSNP  300
NPNVNNGNFF PLASSSATTG IRSNFNHSSS PAMSATALLQ KAAQMGPKNS TTTPEEEERS  360
SSRSSAYNNL ITTTMAAAMM TSPSEPGFGF QDYYMMNPPP HHHHQSGGEA FNGGFITGDE  420
KDDVTVDGGG ETRDFLGLRS LMSHNEILSF ANNLGNCINN TSASEQQQQQ HSHQD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-36168229364Zinc finger protein JACKDAW
5b3h_F6e-36168229364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121134KLKQRSNKDVIRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10011450m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529940.0AK352994.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-12-L02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006392689.10.0protein indeterminate-domain 7 isoform X2
SwissprotQ8H1F50.0IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLE4MWU70.0E4MWU7_EUTHA; mRNA, clone: RTFL01-12-L02
TrEMBLV4JWZ50.0V4JWZ5_EUTSA; Uncharacterized protein
STRINGXP_006392689.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.10.0indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]