PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10011274m
Common NameEUTSA_v10011274mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family FAR1
Protein Properties Length: 714aa    MW: 82516.6 Da    PI: 6.8097
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10011274mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR169.11.1e-21104187189
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                      ++Yn YA+evGF+vr+++s  ++r++e + + ++Cs +g+++ ++ +     r r+etrtgC a++++++ ++++w+v ++ l+HnH l
  Thhalv10011274m 104 NYYNCYATEVGFRVRVKNSWFKRRSKEKYGAVLCCSSQGFKRVNDVN-----RVRKETRTGCPAMIRMRQVDSKRWRVLEVTLDHNHLL 187
                      69*****************************************9988.....999********************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.5E-19104187IPR004330FAR1 DNA binding domain
PfamPF105511.1E-25307399IPR018289MULE transposase domain
PROSITE profilePS509669.606594630IPR007527Zinc finger, SWIM-type
PfamPF044349.3E-5602626IPR007527Zinc finger, SWIM-type
SMARTSM005751.1E-6605632IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    Send to blast
MERSDSGDVD VQASAYLQTE ETHERVDPLS DGECTLRIGD ALICTSEHDE IDVGFSQNEQ  60
RKSEEEEEAR GEFDEEQIGL PVESKEFDAP AVGMEFESYD DAYNYYNCYA TEVGFRVRVK  120
NSWFKRRSKE KYGAVLCCSS QGFKRVNDVN RVRKETRTGC PAMIRMRQVD SKRWRVLEVT  180
LDHNHLLGSK IYKSVKRNGT GTKRKCISSP DSDAKTIKLY RARVMDTGNN MDPNSAMKTQ  240
FQNLAGSPDL LNLRRGDSAA MYNFFCRMQL TNPNFFYLMD VNDEGQLRNV FFADGFSKVS  300
CTYFGDVIFI DNTYISGKFE IPLVSLVGVN HHGQTTLLGC GLLAGETMES YHWLLKVWLS  360
LMKCSPQTIV TDRCKPLESA ISQVFPRSHH RFSLTHIMRK IPEKLGGLHN YDGVRKAFTK  420
AVYETLKVVE FEAAWGYMVH HFGVIDNEWL RFLYEDRARW APVYLKDTFF AGIANARPGE  480
ALNPFFERYV HKQTPLKEFL DKYELALQRK HREETLGDLE SLALNNAELK TKCSFETQLS  540
RIYTRDMFKK FQVEVEEMYS CFSTTQLHVD GPFVIFLVKE RVQSEPNRRE IRDFEVLYNR  600
SVGEVRCICS CFNFYGYLCR HALCVLNFNG VEEIPLQYIL PRWRRDFKRA HVTDNGLTGF  660
VDGTDRVQWF DQLYKSALQV VEEGAVSLDR YKVAMQLLQQ SLDRVHKVEA KQD*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10011274m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006392912.10.0protein FAR1-RELATED SEQUENCE 6
SwissprotQ9SSQ40.0FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBLV4KS690.0V4KS69_EUTSA; Uncharacterized protein
STRINGXP_006392912.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107882531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.10.0FAR1-related sequence 6
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]