PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10011123m
Common NameEUTSA_v10011123mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NAC
Protein Properties Length: 298aa    MW: 34434.6 Da    PI: 4.0355
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10011123mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM56.11.2e-1781195109
              NAM   5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka..eekewyfFskrdkkyatgkrknra......tksgyWkatgkdk 90 
                      ++F P+de l+ +yL+++v + k     +i+++++y+ ePw Lp+ ++   +e++wy+F+ r +++   + ++r+       + g+W +tg ++
  Thhalv10011123m   8 LKFTPSDEKLIGYYLRRRVVTGKD---GFITDIKLYEDEPWLLPHVINDhfNERNWYYFVVRTRRAG--NTPKRTvpgregSNGGTWTTTGAET 96 
                      69*****************99994...45***************7555444788******9999875..455554344444779********** PP

              NAM  91 evlsk....kgelvglkktLvfy 109
                      ++l++    ++++     +L f 
  Thhalv10011123m  97 KILDEkywlENKNEFQEVVLCFL 119
                      **997666555555555566665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.4974156IPR003441NAC domain
SuperFamilySSF1019418.11E-195127IPR003441NAC domain
PfamPF023651.8E-8797IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MEVDPIDLKF TPSDEKLIGY YLRRRVVTGK DGFITDIKLY EDEPWLLPHV INDHFNERNW  60
YYFVVRTRRA GNTPKRTVPG REGSNGGTWT TTGAETKILD EKYWLENKNE FQEVVLCFLR  120
DNNRNNVVDR DMNIIVEQPQ QENRDENIIV EHPQQENRDG NNNMVSNAHV SGVEGSEVDM  180
EFGLQEDDDD SDMFDIDELP DFTHDQQQDQ DMVSSLQGEG GLHEDDDKAT QQQQYPQIAL  240
PPQYQDSGSI NNKIVVMEDE CVSQDHIFDL VDQQAGITQP QQQERVLDPY FDVFITT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10011123m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024013616.11e-138uncharacterized protein LOC18020761
TrEMBLV4NHP40.0V4NHP4_EUTSA; Uncharacterized protein
STRINGXP_006404273.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM145441119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03490.11e-24NAC domain containing protein 6