PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10011058m
Common NameEUTSA_v10011058mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB_related
Protein Properties Length: 338aa    MW: 37788.4 Da    PI: 9.3358
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10011058mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.85.2e-08255304147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r ++T  E e lv+av++lG+g+W+ + ++      +Rt  ++k++w ++
  Thhalv10011058m 255 RRPFTVSEVEALVQAVEMLGTGRWRDVKSHAFdhaSHRTYVDLKDKWKTL 304
                      679***************************999999***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.779250309IPR017930Myb domain
SMARTSM007171.4E-8254307IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.9E-11255305IPR009057Homeodomain-like
PfamPF002493.1E-6255304IPR001005SANT/Myb domain
SuperFamilySSF466891.33E-15256336IPR009057Homeodomain-like
CDDcd116606.38E-17256306No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MLDCGFDDYQ LPMVPRAYRT PRGRRHKMMK SHRSEFKFLA QVAGKFSGDC KPHETKETND  60
DFLVNNFLET MEVKDKPQPC LDKPSQVVLS KDWLALGPSI SSSQITQEEN SNIVKFGIKS  120
LKISELLVDI PESATVGSLK LAVLEVVTQI LKDGLNIGVL LRGKTIVDDS KTLLQIDDDD  180
NNHNLSSLGF MLEPRKSETT TTLAAVSPKK RIRYTVKNYE APGSIESTET VAAKSVVPAC  240
LKPASQPEIV QRRIRRPFTV SEVEALVQAV EMLGTGRWRD VKSHAFDHAS HRTYVDLKDK  300
WKTLVHTAKI SARQRRGEPV PQELLDRVLA AHAFWTG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A5e-472483361098Telomere binding protein TBP1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 4 repeats of telomeric sequences are required for binding.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10011058m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1329606e-54AL132960.2 Arabidopsis thaliana DNA chromosome 3, BAC clone F5K20.
GenBankCP0026866e-54CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024013768.10.0telomere repeat-binding protein 6
SwissprotQ9M3471e-167TRP6_ARATH; Telomere repeat-binding protein 6
TrEMBLV4NG630.0V4NG63_EUTSA; Uncharacterized protein
STRINGXP_006403653.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15921911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53790.11e-174TRF-like 4