PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10010909m
Common NameEUTSA_v10010909mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 226aa    MW: 24358.5 Da    PI: 7.202
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10010909mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.84e-0589111123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ykC+ CgksF++   L  H  +H
  Thhalv10010909m  89 YKCSVCGKSFPSYQALGGHKTSH 111
                      9***********99998888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.35E-1088111No hitNo description
Gene3DG3DSA:3.30.160.602.7E-489111IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.78389116IPR007087Zinc finger, C2H2
PfamPF139121.4E-1489113IPR007087Zinc finger, C2H2
SMARTSM003550.002289111IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
SuperFamilySSF576676.35E-10146173No hitNo description
PfamPF139126.5E-12150175IPR007087Zinc finger, C2H2
PROSITE profilePS501579.12151173IPR007087Zinc finger, C2H2
SMARTSM003550.35151173IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280153173IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MALEALNSPT STTTTTDPPS FLTEPENLDS WTKRKRTKRH RMIDQSNPPS EEEYLALCLL  60
MLARGSSDDD HHHHSPPLPP PSDHHHRDYK CSVCGKSFPS YQALGGHKTS HRKPVSNNNN  120
SNDEGNNNSN GSVINNGNIS NGLVGQSGKT HKCSICFKSF PSGQALGGHK RCHYEGGNGN  180
SNSNGNGSNN HGFDLNLPAD QVLDVFSDQT LGKSQLSGEE TKSAL*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. {ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00399DAPTransfer from AT3G49930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10010909m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), ethylene, dehydration, salt and cold. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1329784e-66AL132978.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F3A4.
GenBankBT0293774e-66BT029377.1 Arabidopsis thaliana At3g49930 mRNA, complete cds.
GenBankCP0026864e-66CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006404088.11e-166zinc finger protein AZF1
SwissprotQ9SSW16e-62AZF1_ARATH; Zinc finger protein AZF1
TrEMBLV4NHA11e-164V4NHA1_EUTSA; Uncharacterized protein
STRINGXP_006404088.11e-165(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31212264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.12e-73C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]