PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10010764m
Common NameEUTSA_v10010764mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bZIP
Protein Properties Length: 177aa    MW: 20114.5 Da    PI: 5.846
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10010764mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.22.8e-1158103651
                      HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   6 rerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 
                      + +r   NReA r++R++Kka+++ Le++vk L++ N++L+ +l++
  Thhalv10010764m  58 NKKRSCGNREAVRKYREKKKARTAYLEDEVKRLQSLNEQLIRKLQS 103
                      6789999**********************************88875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.4E-652120IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.97955121IPR004827Basic-leucine zipper domain
PfamPF077161.2E-1557110IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.88E-857103No hitNo description
Gene3DG3DSA:1.20.5.1706.4E-1157120No hitNo description
CDDcd146862.12E-1065106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MDEEEVEVWD RASRGCSHTH SCNPPGPEDA SHSHTCFHAH THLIIPDSGE NDHCDGSNKK  60
RSCGNREAVR KYREKKKART AYLEDEVKRL QSLNEQLIRK LQSQEMVETE IIRLRTLLVE  120
MQGMIDGELG GFSFQKQCNG SGFVFKEGDV SFCFGLQSDK LMEISQWKVE ELVNNL*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of salt stress response. Functions as a negative transcriptional regulator of salt stress acclimation response by regulating cation homeostasis (PubMed:18703123, PubMed:19248824). Regulates negatively the expression of genes contributing to ion and osmotic homeostasis during salt stress, such as the Na(+) transporter HKT1, the Na(+)/H(+) antiporter SOS1, the aquaporin PIP2-1 and the glutamine synthetase GLN1-3. In addition, targets genes with functions in plant growth and development, such as argonaute 4 (AGO4) and cyclophilin 19 (CYP19) (PubMed:19248824). {ECO:0000269|PubMed:18703123, ECO:0000269|PubMed:19248824}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10010764m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress (PubMed:18703123, PubMed:19248824). Induced by osmotic stress (PubMed:19248824). {ECO:0000269|PubMed:18703123, ECO:0000269|PubMed:19248824}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1176291e-140AK117629.1 Arabidopsis thaliana At3g51960 mRNA for putative bZip transcription factor Atbzip24, complete cds, clone: RAFL17-28-M01.
GenBankBT0054221e-140BT005422.1 Arabidopsis thaliana clone U50385 putative bZIP family transcription factor (At3g51960) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006403861.21e-107basic leucine zipper 24
RefseqXP_024013561.11e-107basic leucine zipper 24
RefseqXP_024013562.11e-107basic leucine zipper 24
RefseqXP_024013563.11e-107basic leucine zipper 24
RefseqXP_024013565.11e-107basic leucine zipper 24
SwissprotQ8GTS13e-86BZP24_ARATH; Basic leucine zipper 24
TrEMBLV4LNG91e-129V4LNG9_EUTSA; Uncharacterized protein
STRINGXP_006403861.11e-129(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM151721518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51960.11e-88basic leucine zipper 24