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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Thhalv10010750m |
Common Name | EUTSA_v10010750mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family |
SRS |
Protein Properties |
Length: 186aa MW: 20628.3 Da PI: 10.0456 |
Description |
SRS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Thhalv10010750m | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF702 | 144.9 | 6.8e-45 | 40 | 175 | 4 | 154 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaesk 97
++ C+dCGn+akk+C +eRCRtCCk+rg++CathvkstWvp++ ++ ++++k+ r + s+k ++++ + + +++s+
Thhalv10010750m 40 DEKVCRDCGNRAKKECLFERCRTCCKTRGYQCATHVKSTWVPSSSSSS-----------------SDRKKKLRIDYSDKYNSANVSIVRTTTSR 116
5789**************************************986554.................33444444444555555555555566666 PP
DUF702 98 keletss.lPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154
+e+++++ lP +++++avfr++rv+++++ +++e++Yq++v+i+GhvfkG+L+++G+++
Thhalv10010750m 117 QETSFKEgLPGKIEAPAVFRRTRVTAISNnEQAEIGYQATVTINGHVFKGFLHYYGVDH 175
66666555*******************9868899***********************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 186 aa
Download sequence Send
to blast |
MLGLRNILLA APPSQITQTS PSPANFAAVE DNKARNNNVD EKVCRDCGNR AKKECLFERC 60 RTCCKTRGYQ CATHVKSTWV PSSSSSSSDR KKKLRIDYSD KYNSANVSIV RTTTSRQETS 120 FKEGLPGKIE APAVFRRTRV TAISNNEQAE IGYQATVTIN GHVFKGFLHY YGVDHNKAFP 180 CLSKK*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM) (By similarity). {ECO:0000250}. |