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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Thhalv10010621m |
| Common Name | EUTSA_v10010518mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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| Family |
C3H |
| Protein Properties |
Length: 277aa MW: 31069.5 Da PI: 8.1571 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Thhalv10010621m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 20 | 1.2e-06 | 3 | 26 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
k+ lC+ffa G C G++C F+H+
Thhalv10010621m 3 KRILCKFFAH-GACLKGENCEFSHD 26
889***6666.*************5 PP
|
| 2 | zf-CCCH | 27.1 | 7.3e-09 | 34 | 54 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26
+C ++++ G+C+yG+rC++ H+
Thhalv10010621m 34 ICTYYQK-GICSYGSRCRYEHV 54
7******.***********997 PP
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| 3 | zf-CCCH | 20.2 | 1e-06 | 121 | 143 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26
+++C+ +a+ G C++Gd C+ +Hg
Thhalv10010621m 121 QPICS-YAAAGDCPRGDECPHIHG 143
68999.*************99997 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00356 | 3.6E-5 | 1 | 27 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.943 | 1 | 28 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 2.6E-4 | 3 | 28 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.1E-7 | 3 | 26 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.624 | 29 | 56 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.4E-4 | 31 | 55 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.31E-5 | 31 | 53 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.0E-4 | 34 | 53 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 3.4E-6 | 34 | 54 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.549 | 118 | 145 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.019 | 119 | 144 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF57850 | 3.06E-13 | 177 | 251 | No hit | No description |
| Gene3D | G3DSA:3.30.40.10 | 5.0E-10 | 180 | 246 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| CDD | cd00162 | 0.00128 | 186 | 246 | No hit | No description |
| SMART | SM00184 | 5.5E-7 | 187 | 244 | IPR001841 | Zinc finger, RING-type |
| PROSITE profile | PS50089 | 12.342 | 187 | 245 | IPR001841 | Zinc finger, RING-type |
| Pfam | PF00097 | 3.1E-7 | 187 | 244 | IPR018957 | Zinc finger, C3HC4 RING-type |
| PROSITE pattern | PS00518 | 0 | 211 | 220 | IPR017907 | Zinc finger, RING-type, conserved site |
| Sequence ? help Back to Top |
| Protein Sequence Length: 277 aa
Download sequence Send
to blast |
MSKRILCKFF AHGACLKGEN CEFSHDWKDP TNNICTYYQK GICSYGSRCR YEHVKASRPH 60
PSASSSSGVP RSPPASASNL LALSSVSSSC LKPAWNLDSL HQDSLDEVST FNPGTTKPEE 120
QPICSYAAAG DCPRGDECPH IHGNICPTCR KHCLHPFRLE ERDEHKRVCE KKHKQLEALK 180
LSQEIECCVC LERVLSKPTP SERKFGLLTE CDHAFCIACI RNWRSSSPST GMDVNSTLRA 240
CPICRKLSYF VVPSVIWFSA PEEKKEIINN YREKLR*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | GQ903576 | 0.0 | GQ903576.1 Arabidopsis thaliana ecotype Wassilewskija chloroplast luminal 19 kDa protein (At3g63540) gene, complete cds; and CCCH-type zinc finger protein C3H69 (At3g63550) gene, complete cds, alternatively spliced; nuclear genes for chloroplast products. |
