PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10010588m
Common NameEUTSA_v10010588mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ZF-HD
Protein Properties Length: 293aa    MW: 33461.6 Da    PI: 10.1111
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10010588mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer90.51.6e-2868123359
      ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                      +++YkeC+kNhAa +Ggh+vDGC++fmp  geegt  alkCaAC CHR+FHR+e+  
  Thhalv10010588m  68 AAKYKECQKNHAALTGGHVVDGCCDFMPG-GEEGTLGALKCAACKCHRSFHRKEMYG 123
                      689*************************9.999********************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.5E-2669121IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-2270121IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.4E-2570121IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152324.8771120IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466897.31E-18181253IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-26182253IPR009057Homeodomain-like
PROSITE profilePS500718.843190254IPR001356Homeobox domain
TIGRFAMsTIGR015651.4E-25192249IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MEFGGNGNAI TSMISTTPLE VKPHSDPGRD PYPSPDAKPG SDPISKPPMV HTAVKKENPK  60
PMTRSDQAAK YKECQKNHAA LTGGHVVDGC CDFMPGGEEG TLGALKCAAC KCHRSFHRKE  120
MYGHSKQELI TPAFYYSNSS YKAVQPRGMH PTGEIGRRTS SSSEDMNKIL NHRNQSIDGN  180
GSMRMMMMRK KKKRIRTKIN EEQKEKMKEF AERLGWRIQK KDEEEIDKFC RLVNLRRQVF  240
KVWMHNNKQA MKRNFYRIVD ANLDNISVYY VLIFRVYVRF LLISFIVCGC NK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A8e-191932501875ZF-HD homeobox family protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1188193RKKKKR
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10010588m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024013635.10.0zinc-finger homeodomain protein 7
SwissprotQ9SVL01e-122ZHD7_ARATH; Zinc-finger homeodomain protein 7
TrEMBLV4LZT60.0V4LZT6_EUTSA; Uncharacterized protein
STRINGXP_006403985.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138541525
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50890.11e-122homeobox protein 28