PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

GATA

Protein Properties

Length: 326aa MW: 36043.9 Da PI: 6.5982

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10010544m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	56.4	3.9e-18	237	270	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C +C +tkTp+WR gp g+ktLCnaCG++y++ + Thhalv10010544m 237 CMHCEVTKTPQWRLGPMGPKTLCNACGVRYKSGR 270 99*****************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF016992	1.3E-89	1	324	IPR016679	Transcription factor, GATA, plant
SMART	SM00401	1.7E-15	231	281	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	11.49	231	267	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	2.4E-14	235	268	IPR013088	Zinc finger, NHR/GATA-type
SuperFamily	SSF57716	1.19E-14	235	294	No hit	No description
CDD	cd00202	2.43E-14	236	283	No hit	No description
PROSITE pattern	PS00344	0	237	262	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	4.2E-16	237	270	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm
GO:0009845	Biological Process	seed germination
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MIGQSFPEDL DCGNFFDNMD DLIDFPGGDI DVGFDIGDSD SFPNIWTTHH DTWPTASDPL 60 FSSNTNSDSS TELYVPFEDI VKVERPPSFV EESSLVEKKE DSFSTNTDSS SSHNSQFRSS 120 SPVSVLESSS SSSQTTNTTS LVLPGKHGRP RTKRSRPPVH EKDRVIRDNN VCGADSRLII 180 RIPKQFLSDH SKMITKKKKK KTKVTSSSSS SGIDLEVNGN SNVDISYSSE QNLVRKCMHC 240 EVTKTPQWRL GPMGPKTLCN ACGVRYKSGR LFPEYRPAAS PTFTPALHSN SHKKVAEMRN 300 KRCSDGSYTN EENDLIPNNA YIGVD*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10010544m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353461	0.0	AK353461.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-37-G07.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006403533.1	0.0	GATA transcription factor 8
Swissprot	Q9SV30	1e-167	GATA8_ARATH; GATA transcription factor 8
TrEMBL	E4MY64	0.0	E4MY64_EUTHA; GATA transcription factor
TrEMBL	V4NFX3	0.0	V4NFX3_EUTSA; GATA transcription factor
STRING	XP_006403533.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4975	27	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54810.2	1e-131	GATA family protein

Link Out ? help Back to Top
Phytozome	Thhalv10010544m
Entrez Gene	18021190

Publications ? help Back to Top
Choi D, et al. iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis. Mol Plant, 2014. 7(5): p. 792-813 [PMID:24380880] Li T,Wu XY,Li H,Song JH,Liu JY A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network. Mol Plant, 2016. 9(5): p. 650-661 [PMID:26961720]