PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

SRS

Protein Properties

Length: 375aa MW: 38655.3 Da PI: 7.5444

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10010460m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	232.5	7e-72	138	287	4	152
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstklssaes 96 +++sCqdCGnqakkdCah+RCRtCCksrgf+C thv+stWvpaakrrerqqqla+ + ++ s+ +++ +kr+re+ +++s+l +t+++++++ Thhalv10010460m 138 NGVSCQDCGNQAKKDCAHMRCRTCCKSRGFECPTHVRSTWVPAAKRRERQQQLATVQPQTHLSRgDQSVPKRQRENLPATSSSLVCTRVPTHHN 231 4679************************************************9988877766688999******************** PP DUF702 97 kkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGl 152 + le+ ++P+evss+avfrcvrvssv+dgeee+aYqtavsigGh+fkGiLyd+G+ Thhalv10010460m 232 ASGLEVGNFPAEVSSPAVFRCVRVSSVEDGEEEFAYQTAVSIGGHIFKGILYDHGA 287 *****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	3.4E-65	139	287	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.0E-27	141	183	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	4.1E-27	240	286	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010051	Biological Process	xylem and phloem pattern formation
GO:0010252	Biological Process	auxin homeostasis
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048479	Biological Process	style development
GO:0048480	Biological Process	stigma development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MAGFFSLDGG GGGGGGGGGN SQEEHRTNTN PPPPVSESWL WYRNPNVNAN ANANAPSSSN 60 AALGTLELWQ NHNNQEIMFQ HQQHQQRLDL YSSAAGLGVG PSNHSQFDIS GETSNAGAGR 120 AAALMMMRSG GSGGGGGNGV SCQDCGNQAK KDCAHMRCRT CCKSRGFECP THVRSTWVPA 180 AKRRERQQQL ATVQPQTHLS RGDQSVPKRQ RENLPATSSS LVCTRVPTHH NASGLEVGNF 240 PAEVSSPAVF RCVRVSSVED GEEEFAYQTA VSIGGHIFKG ILYDHGAGSS GSGGYNVIAA 300 GESSSAGGGG GAQQLNLITA GSVTVATASS STPNAGGIGS SSAAAATYID PNALYPTPIN 360 TFMAGTQFFP NPRS*

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MAGFFSLDGG GGGGGGGGGN SQEEHRTNTN PPPPVSESWL WYRNPNVNAN ANANAPSSSN  60
AALGTLELWQ NHNNQEIMFQ HQQHQQRLDL YSSAAGLGVG PSNHSQFDIS GETSNAGAGR  120
AAALMMMRSG GSGGGGGNGV SCQDCGNQAK KDCAHMRCRT CCKSRGFECP THVRSTWVPA  180
AKRRERQQQL ATVQPQTHLS RGDQSVPKRQ RENLPATSSS LVCTRVPTHH NASGLEVGNF  240
PAEVSSPAVF RCVRVSSVED GEEEFAYQTA VSIGGHIFKG ILYDHGAGSS GSGGYNVIAA  300
GESSSAGGGG GAQQLNLITA GSVTVATASS STPNAGGIGS SSAAAATYID PNALYPTPIN  360
TFMAGTQFFP NPRS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:12361963, ECO:0000269\|PubMed:16740145, ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18811619, ECO:0000269\|PubMed:20154152, ECO:0000269\|PubMed:22318676}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00613	PBM	Transfer from AT3G51060	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10010460m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269\|PubMed:21976484}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006403958.2	0.0	protein SHI RELATED SEQUENCE 1
Swissprot	Q9SD40	0.0	SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBL	V4NGU3	0.0	V4NGU3_EUTSA; Uncharacterized protein
STRING	XP_006403958.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3419	28	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	1e-160	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	Thhalv10010460m
Entrez Gene	18021134

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]