PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10010453m
Common NameEUTSA_v10010453mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family GRF
Protein Properties Length: 379aa    MW: 42328.4 Da    PI: 7.5377
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10010453mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC802.2e-25146190145
              WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                      d+epgrC+RtDGKkWRCsr+v++g+k+C+rH+hrgr+rsrk++e+
  Thhalv10010453m 146 DPEPGRCKRTDGKKWRCSRDVVGGHKYCDRHIHRGRNRSRKPVET 190
                      79****************************************986 PP
2QLQ53.19.8e-1978112337
              QLQ   3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                      F+++Q+q+L+ Q+l+y+y++a++ vP+eLl++i+k
  Thhalv10010453m  78 FSWTQWQELELQALIYRYMLAGASVPQELLLPIKK 112
                      9********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.3E-1176112IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.02277112IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088806.5E-1378110IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.647146190IPR014977WRC domain
PfamPF088793.7E-21147189IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MDLQLKQWRS QQQNESEEQG SASKISNFFF DQIQSQTATS AAALPLFVPE PTTSSSFSCF  60
SPDSSSSSSR FLKMGNFFSW TQWQELELQA LIYRYMLAGA SVPQELLLPI KKSLFHQSPL  120
HFLHHPLQHN FPHHQPSWYW GRGAMDPEPG RCKRTDGKKW RCSRDVVGGH KYCDRHIHRG  180
RNRSRKPVET ATTAATNAAT TTASSFVLGE ENGRGPNNLL FSSGSSHSSS QHLHLNSHQS  240
CSSEMKQEGN TNKRPYEAQS GFNNGRSDDG HILRHFFDDW PRTSDSTSSP MSSSTCHLSI  300
SMPGNTSSDV SLKLSTGSEE EEENMRNNNE REQQQNMNWW SSGSNNHNMG GPLAEALRSA  360
SSTSSVLHQM GISTQVFH*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10010453m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1026370.0AY102637.1 Arabidopsis thaliana transcription activator (GRF4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006403753.10.0growth-regulating factor 4
SwissprotQ8L8A70.0GRF4_ARATH; Growth-regulating factor 4
TrEMBLV4NGD90.0V4NGD9_EUTSA; Uncharacterized protein
STRINGXP_006403753.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19262667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52910.11e-159growth-regulating factor 4
Publications ? help Back to Top
  1. Kuijt SJ, et al.
    Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors.
    Plant Physiol., 2014. 164(4): p. 1952-66
    [PMID:24532604]
  2. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]