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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10010426m | ||||||||
Common Name | EUTSA_v10010426mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | bZIP | ||||||||
Protein Properties | Length: 403aa MW: 44367.9 Da PI: 6.3622 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 45.9 | 1.2e-14 | 228 | 283 | 3 | 58 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 ++kr+rr+ +NRe+ArrsR+RK++++ e + v +L e ++L ++l+ ++ ++++ Thhalv10010426m 228 DVKRARRMLSNRESARRSRRRKQEQMNEFDTQVSQLRVEHSTLLSRLSDMNHKYDA 283 68******************************************999988877765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.3E-16 | 226 | 290 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 4.5E-10 | 227 | 280 | No hit | No description |
PROSITE profile | PS50217 | 10.668 | 228 | 282 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.5E-12 | 229 | 282 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 4.66E-10 | 230 | 280 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 233 | 248 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF12498 | 1.1E-12 | 297 | 348 | IPR020983 | Basic leucine-zipper, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000693 | Biological Process | positive regulation of seed maturation | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 403 aa Download sequence Send to blast |
MHIVFSVDDL TESFWPASAP VPEPPQNMAD GMTRSQSEWA FQRLIQEMSG SDASPTTNVI 60 DRSPPQVQSE QSLSTIDETS DVVEIQKPPQ NHRLPPGDDQ RDRNRARSSD PLDSAGVDPN 120 QYHAILKSRL DLACAAVARR VGTVKPEDSS SSAGNQKQSL PTRPQAQGSI VAQTSPGASS 180 VGFVPSISTQ KKADVPARQT TSISSRDDSD DDDLDGDTET ADNGDPTDVK RARRMLSNRE 240 SARRSRRRKQ EQMNEFDTQV SQLRVEHSTL LSRLSDMNHK YDAAAVDNRI LRADIETLRT 300 KVKMAEETVK RVTGVNPLHW AARPNMGIPL NNTPTDSSRI QPNSNHILKP AIPSTTGAGL 360 APNQRVERGN FLGEQVNREG IQNPFAPDSN LYETLPHWNH KH* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 242 | 249 | RRSRRRKQ |
2 | 244 | 249 | SRRRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'-ACGT-3' box, especially present in G-box-like motif (5'-CCACGTGGCC-3'), ABRE elements, of seed storage protein (SSP) encoding gene promoters (e.g. At2S and CRU3) and promotes their expression in seeds when in complex with ABI3 and BZIP53. {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:19261733, ECO:0000269|PubMed:19531597}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10010426m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353061 | 0.0 | AK353061.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-20-B05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006403555.1 | 0.0 | basic leucine zipper 25 isoform X1 | ||||
Swissprot | Q9M1G6 | 0.0 | BZP25_ARATH; Basic leucine zipper 25 | ||||
TrEMBL | E4MX14 | 0.0 | E4MX14_EUTHA; mRNA, clone: RTFL01-20-B05 | ||||
TrEMBL | V4LYN7 | 0.0 | V4LYN7_EUTSA; Uncharacterized protein | ||||
STRING | XP_006403555.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5848 | 26 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54620.1 | 0.0 | basic leucine zipper 25 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10010426m |
Entrez Gene | 18021208 |
Publications ? help Back to Top | |||
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