PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10010071m
Common NameEUTSA_v10010070mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C3H
Protein Properties Length: 1320aa    MW: 144871 Da    PI: 6.744
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10010071mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.92.6e-0612981319426
                       ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH    4 elCrffartGtCkyGdrCkFaHg 26  
                       ++C+ f+++G+Ck G++C+F H+
  Thhalv10010071m 1298 KICK-FYESGYCKKGASCSFWHP 1319
                       6899.8999***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.103.8E-8101161IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579033.77E-7102158IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS500168.591106172IPR019787Zinc finger, PHD-finger
SMARTSM002499.1E-7108154IPR001965Zinc finger, PHD-type
CDDcd155681.64E-19108153No hitNo description
PROSITE patternPS013590109169IPR019786Zinc finger, PHD-type, conserved site
SMARTSM001512.1E-4307397IPR019835SWIB domain
Gene3DG3DSA:1.10.245.102.6E-23315398IPR003121SWIB/MDM2 domain
SuperFamilySSF475927.85E-21315393IPR003121SWIB/MDM2 domain
PfamPF022012.8E-13321392IPR003121SWIB/MDM2 domain
PROSITE profilePS5136019.018451584IPR004343Plus-3 domain
SMARTSM007199.0E-44451561IPR004343Plus-3 domain
SuperFamilySSF1590425.1E-26452580IPR004343Plus-3 domain
PfamPF031268.9E-18456559IPR004343Plus-3 domain
SuperFamilySSF552772.09E-14719775IPR003169GYF domain
PROSITE profilePS5082914.26722776IPR003169GYF domain
CDDcd000727.11E-17723779No hitNo description
SMARTSM004446.4E-12723778IPR003169GYF domain
Gene3DG3DSA:3.30.1490.401.1E-15724776IPR003169GYF domain
PfamPF022131.1E-10724768IPR003169GYF domain
SuperFamilySSF902294.97E-612941318IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.11712941319IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-412981318IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1320 aa     Download sequence    Send to blast
MENQQKQLQQ GVPELAALAR PEESSVRDID LMRADQCDEI VPAALSVPAP TVGVTVGVPI  60
EREAKLVDEA APVKRKRGRP PRAHAKTPPQ TRPPPPPPQR KEDKEEDVCF ICFDGGDLVL  120
CDRRNCPKAY HPACIKRDEA FFRTTAKWNC GWHICGTCQK ASSYMCYTCT FSVCKRCIKD  180
ADYVIVRGNM GLCGTCIKPI MLIENIAQGE NEAVKVDFDD KLSWEYLFKV YWLCLKEDLS  240
LTVDELTKAN NPWKGVINTA PKVEPRNDRA TAYSSALDVA VNGTRRRRTS DSPTLPSELD  300
AKNPSNIPKK RPRDTSWATK ELLEFLSFMR NGDTSVISQF DVQGLLLDYI KKKNLRDPLQ  360
KSQVVCDLML VKLFGKQRVG HFEMLKLLES HFLIQEKPKD EKTTNGGTTH AVPSQIEEGS  420
VHDATVRDRR RKMRKKTDVR VQNENLDAYA AIDVHNINLI YLRRKFIETL LADVNKVHEK  480
VVGTILRIKV TGSDQKMDIH RLVQVVGTSK ATSSYQVGTK TTDVMLEILN LDKREVISID  540
QLSDQNVTED ECKRLRQSIK CGLNKRLTVG DILKTAETLQ AMRINEALKA EILKLKHLRD  600
RASEKGHRKE LRECVEKIGL LESHEERQRL LQEVPEVHTD PSMDPSHASA EDAGLDNHIK  660
AQSKGPQQKG DILNNLGNNA QNKYEAPNLR SRNVVHADKD DCSKVHNNSS NIQETGKDDE  720
ETEIWHYRDP TGKTQGTFSM LQLRRWKSSG HFPPHLRIWK THENEDESVL LTEALAGRFD  780
KATAIPSSSL LPQELKPSPQ NSGHTGVEVA CLQKNPTPVN TSTTSSSSSS VGVLANDPKE  840
KQFEALESSS GKIEDNNSVH LQPQVSCPAS ISVVTGHGVT PGLRETPGTD QSSAVRGDSN  900
HSTINAVEDG TNGVSVSING SVHAPNLNQE IHFPDFPSPT PKSSPEDLEA QAAETIQSLS  960
SCVLVKGPSG VTWSTTATTT TDAATTTSSV VVTGGQFPQI TQQNAVALAT PSVKPIDLPA  1020
DHATTTQNAV VLAAPSVKPI DLPADHATTT QTSDNTQVAH SSGWPAIVAD PDECDESVSD  1080
LLAEVEAMEQ NGLPSSPTST FHCDDDDDLT KGPEKDFFNP VARMSLTPET CRMDISQASI  1140
LDSVSAGKSS MVTEAKDSTS FNHCGTAGTE LLLFAPPAPA SISHDLNLTT TALRLGSETT  1200
VEAGSVERLP RSVSGVGLEP SPRSLSSHDS GRGNTERSPR GSQQKRSGGH SRDRQWWNNG  1260
HNSSFNNSHN NRQWPYSSSH GYDHGSGSYA AHPPKGLKIC KFYESGYCKK GASCSFWHP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gnd_A2e-151061751581Histone-lysine N-methyltransferase NSD3
4gnd_C2e-151061751581Histone-lysine N-methyltransferase NSD3
4gne_A2e-151061751581Histone-lysine N-methyltransferase NSD3
4gnf_A2e-151061751581Histone-lysine N-methyltransferase NSD3
4gng_A2e-151061751581Histone-lysine N-methyltransferase NSD3
4gng_D2e-151061751581Histone-lysine N-methyltransferase NSD3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10010071m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1329800.0AL132980.3 Arabidopsis thaliana DNA chromosome 3, BAC clone F24M12.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006403952.10.0zinc finger CCCH domain-containing protein 44 isoform X2
SwissprotQ9SD340.0C3H44_ARATH; Zinc finger CCCH domain-containing protein 44
TrEMBLV4L4Z40.0V4L4Z4_EUTSA; Uncharacterized protein
STRINGXP_006403953.10.0(Eutrema salsugineum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51120.10.0DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding