PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

WOX

Protein Properties

Length: 192aa MW: 21962.4 Da PI: 6.5208

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10009917m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.5	6.1e-20	77	137	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++t++ql++Le+ +e+ +p+ ++ +e+Ak+l ++te++V++WFqNrRa+ k+ Thhalv10009917m 77 RQRWNPTSTQLKILERIYEErRGTPDPRRVREIAKELsehgQITEKNVYNWFQNRRARSKR 137 89***************9899**********************************97 PP
2	Wus_type_Homeobox	91.9	6.1e-30	76	139	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RW+Pt++Q+kiLe++y++ tP +++++i++eL+e+G+i++kNV++WFQNr+aR+++kq Thhalv10009917m 76 TRQRWNPTSTQLKILERIYEERRGTPDPRRVREIAKELSEHGQITEKNVYNWFQNRRARSKRKQ 139 689***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.1E-16	70	142	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.55E-18	71	143	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.24	73	138	IPR001356	Homeobox domain
SMART	SM00389	1.2E-12	75	142	IPR001356	Homeobox domain
Pfam	PF00046	1.5E-17	77	137	IPR001356	Homeobox domain
CDD	cd00086	5.63E-13	77	139	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MERESQNGEY DGSVMTEEQM EILRKQIAIY VVISNNLRLL HHSLSSFNPL SSGMNQTGLG 60 NFDQMVASSS GHRMSTRQRW NPTSTQLKIL ERIYEERRGT PDPRRVREIA KELSEHGQIT 120 EKNVYNWFQN RRARSKRKQP QTTTTMAGQA DDAAVATEDE EERRSCEVSG GFESYDHILF 180 PTPDLGNIFI H*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	130	138	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10009917m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006416370.2	1e-138	WUSCHEL-related homeobox 14
Swissprot	Q9LM84	1e-91	WOX14_ARATH; WUSCHEL-related homeobox 14
TrEMBL	V4L4N8	1e-141	V4L4N8_EUTSA; Uncharacterized protein
STRING	XP_006416370.1	1e-142	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12211	17	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20700.1	7e-79	WUSCHEL related homeobox 14

Link Out ? help Back to Top
Phytozome	Thhalv10009917m
Entrez Gene	18992861

Publications ? help Back to Top
Denis E, et al. WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J., 2017. 90(3): p. 560-572 [PMID:28218997]