PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10009836m
Common NameEUTSA_v10009836mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 273aa    MW: 31540.7 Da    PI: 6.8011
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10009836mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.21.9e-15112163155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++Y+k+L+
  Thhalv10009836m 112 QRMTHIAVERNRRKQMNEYLAVLRSLMPSS---YAQRGDQASIVGGAINYVKELE 163
                      79****************************...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.0E-14110165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.06E-13110167No hitNo description
PROSITE profilePS5088816.196111162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-17111173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-12112163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-10117168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MPLESILYPQ DPYGYLSNCK DFMFHDLYYQ EEVVAQDTKK NIDKLGQEQS FVENDKEEDL  60
QWRDYHHQYP LNTSLEEELG LPIDMEKHPP LQQRRKRRRT RCNKNKEEIE NQRMTHIAVE  120
RNRRKQMNEY LAVLRSLMPS SYAQRGDQAS IVGGAINYVK ELEHILQSLE PNTTTTTTHE  180
ANTSTSSLVG PFSDFFSFPQ YSTKSSSVTE SSSSPAEIEV TMAEGHANIK IMVKKKPRQL  240
LKLVASIQSL RLTLLHLNVT TLDNLILYSI SVK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19298QRRKRRR
29498RKRRR
39499RKRRRT
4112123RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10009836m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006416194.20.0transcription factor bHLH94
SwissprotQ9SK911e-145BH094_ARATH; Transcription factor bHLH94
TrEMBLV4KWZ00.0V4KWZ0_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006416194.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111627102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.11e-137bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]