PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10009765m
Common NameEUTSA_v10009765mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 269aa    MW: 30991.9 Da    PI: 5.8618
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10009765mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.32.7e-08143188555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +++ r+RR++i ++ +eL +l+P +     +K + ae+ e A +Y+k Lq
  Thhalv10009765m 143 QSIAARKRRRKITEKTQELGKLIPGN-----QKHNTAEMFEAAAKYVKFLQ 188
                      57888*******************98.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.93E-11135202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.33E-9136192No hitNo description
PROSITE profilePS5088813.071138187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-10141203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.8E-6143188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.9E-9144193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MIIPETDNTF FFQAQQQHQP SHYEKALSPS LFEFDHLDTF FEPFLPPQEI FISNPNTQVF  60
NESQDLDSFF PAPNKHQKLI DSSFHFNNTH HDPLFPSPNP NLFDSYTNEA SNFSDFRVPD  120
FTPAFNVGWG DQNDTKKPKL SAQSIAARKR RRKITEKTQE LGKLIPGNQK HNTAEMFEAA  180
AKYVKFLQVQ IEILQLRQTK MQTQESPEVA GEMQFLLASQ NIQEKLSTEE VCVVPREMVQ  240
VLKAEECILR NPKIYRDINK LLSTNLVN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147151RKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10009765m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006415438.20.0transcription factor bHLH52 isoform X1
SwissprotQ9SA821e-132BH052_ARATH; Transcription factor bHLH52
TrEMBLV4MQ400.0V4MQ40_EUTSA; Uncharacterized protein
STRINGXP_006415438.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45472552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.11e-135bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]