PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10009659m
Common NameEUTSA_v10009659mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ERF
Protein Properties Length: 189aa    MW: 20373.9 Da    PI: 4.7041
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10009659mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.99e-171160155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     + y+G+r ++ +g+Wv+eIr+p++   ++r++lg++ tae+Aa+a++ a+ +l+g
  Thhalv10009659m 11 PVYRGIR-CR-SGKWVSEIREPKK---TTRIWLGTYPTAEMAAAAYDVAAMALKG 60
                     68****9.55.6*********854...5***********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.4E-101160IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-181269IPR016177DNA-binding domain
SMARTSM003801.5E-271274IPR001471AP2/ERF domain
PROSITE profilePS5103220.1921268IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-271269IPR001471AP2/ERF domain
CDDcd000181.02E-161368No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MATTAGRKKD PVYRGIRCRS GKWVSEIREP KKTTRIWLGT YPTAEMAAAA YDVAAMALKG  60
REAILNFPGS ATSYPVPGST SAADIRAAAA AAAAMKGCEE EEEEEKAKKT TSSSSFSKSR  120
SRDFHVAGDM ASSSWCGTEF MDEEEVLNMP NLLANMAEGM MVAPPPWMSS RPLDDSPENS  180
NDEDLWGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1313681572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00138DAPTransfer from AT1G12630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10009659m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006417215.11e-136ethylene-responsive transcription factor ERF027
SwissprotQ38Q393e-76ERF27_ARATH; Ethylene-responsive transcription factor ERF027
TrEMBLV4L7431e-134V4L743_EUTSA; Uncharacterized protein
STRINGXP_006417215.11e-135(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19572777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12630.17e-68ERF family protein