PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10009495m
Common NameEUTSA_v10009495mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 210aa    MW: 23183.5 Da    PI: 6.9118
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10009495mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000215981123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C++C + F ++  L  H++ H
  Thhalv10009495m 59 FSCNYCRRKFYSSQALGGHQNAH 81
                     89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.39E-65687No hitNo description
PROSITE profilePS5015711.3855986IPR007087Zinc finger, C2H2
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MTESDDASRE SPARVVETSS NQDLSKPEST TPVSLDLKLN DSFNDDTKGT KCESSPRVFS  60
CNYCRRKFYS SQALGGHQNA HKRERTMAKR AMHMGRMFGH HHRPYTYSSS SLGMQAHSGV  120
LHHSLSQPQP PLARFHHQGY FGNTVPLFFD YDDGSDFFWP GSFRQVVEEA EAPVVVAVTE  180
SGLDLNSAAA NGSVVDNNNS SKPDLTLRL*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10009495m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527370.0AK352737.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-07-G06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006415825.11e-156zinc finger protein 7
RefseqXP_024008975.11e-156zinc finger protein 7
SwissprotQ392661e-131ZFP7_ARATH; Zinc finger protein 7
TrEMBLE4MW401e-155E4MW40_EUTHA; mRNA, clone: RTFL01-07-G06
TrEMBLV4L3561e-155V4L356_EUTSA; Uncharacterized protein
STRINGXP_006415825.11e-156(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139991725
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24625.11e-110zinc finger protein 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Joseph MP, et al.
    The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development.
    Plant Physiol., 2014. 165(3): p. 1203-1220
    [PMID:24808098]
  3. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]