PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10009466m

Common Name

EUTSA_v10009466mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

NAC

Protein Properties

Length: 281aa MW: 32372.2 Da PI: 4.5729

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10009466m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	165.1	2.4e-51	7	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeelv +yL+++ eg ++el e+i+ +d+yk++Pw+Lp k + +++ ew+fF++rd+ky++g+r nratksgyWkatgkd+++ Thhalv10009466m 7 LPPGFRFHPTDEELVGYYLHRRNEGLEIEL-EIIPLMDLYKFDPWELPeKsFLPNRDMEWFFFCRRDRKYQNGSRINRATKSGYWKATGKDRKI 99 79**************************.99**********95334556888******************************** PP NAM 93 lsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +++ +g++ktLvfy grap g +t+Wvmheyrl Thhalv10009466m 100 VCQssssssSSSIIGCRKTLVFYMGRAPFGGRTEWVMHEYRL 141 97666555555***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.79E-58	3	164	IPR003441	NAC domain
PROSITE profile	PS51005	56.29	7	165	IPR003441	NAC domain
Pfam	PF02365	1.6E-28	8	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MVGSSSLPPG FRFHPTDEEL VGYYLHRRNE GLEIELEIIP LMDLYKFDPW ELPEKSFLPN 60 RDMEWFFFCR RDRKYQNGSR INRATKSGYW KATGKDRKIV CQSSSSSSSS SIIGCRKTLV 120 FYMGRAPFGG RTEWVMHEYR LCDNDTSQGS LNFKGDFALC RVIKRDELTL KKCETISQEV 180 SDEPLRNNVE ISCQANDDVG KGSCDASNTL WTSPDLIFES SFKGNLQSQT EEDSGFQVFA 240 LPEFEYPPES FADLNFVWEM ENPVMFDNYE ESHMNNEVMN *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-50	6	165	19	168	NAC domain-containing protein 19
3swm_B	1e-50	6	165	19	168	NAC domain-containing protein 19
3swm_C	1e-50	6	165	19	168	NAC domain-containing protein 19
3swm_D	1e-50	6	165	19	168	NAC domain-containing protein 19
3swp_A	1e-50	6	165	19	168	NAC domain-containing protein 19
3swp_B	1e-50	6	165	19	168	NAC domain-containing protein 19
3swp_C	1e-50	6	165	19	168	NAC domain-containing protein 19
3swp_D	1e-50	6	165	19	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269\|PubMed:21911380, ECO:0000269\|PubMed:25182467, ECO:0000269\|PubMed:27986917}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00175	DAP	Transfer from AT1G32510	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10009466m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by wounding in the flowering stem. {ECO:0000269\|PubMed:21911380}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP002684	1e-106	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBank	F5D14	1e-106	AC007767.3 Sequence of BAC F5D14 from Arabidopsis thaliana chromosome 1, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006415183.1	0.0	NAC domain-containing protein 71
Swissprot	O49697	1e-90	NAC71_ARATH; NAC domain-containing protein 71
TrEMBL	V4MPK0	0.0	V4MPK0_EUTSA; Uncharacterized protein
STRING	XP_006415183.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15029	17	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32510.1	1e-158	NAC domain containing protein 11

Link Out ? help Back to Top
Phytozome	Thhalv10009466m
Entrez Gene	18991795

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Asahina M,Satoh S Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues. J. Plant Res., 2015. 128(3): p. 381-8 [PMID:25736731] Matsuoka K, et al. Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls. Plant Cell Physiol., 2016. 57(12): p. 2620-2631 [PMID:27986917]