PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10009455m
Common NameEUTSA_v10009455mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C3H
Protein Properties Length: 356aa    MW: 42472.5 Da    PI: 8.3057
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10009455mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.18e-10151174427
                      ---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                      + C +++ tG+C+yG rC+F+H+p
  Thhalv10009455m 151 KDCLNYRNTGWCNYGKRCHFNHPP 174
                      68********************97 PP
2zf-CCCH27.26.7e-09178198425
                      ---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                      + C+ff++ GtC yG++C+F H
  Thhalv10009455m 178 PVCKFFLK-GTCEYGSNCRFKH 198
                      78******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.535147175IPR000571Zinc finger, CCCH-type
SMARTSM003560.0083147174IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-7151174IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.45E-5151173IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.3E-5153173IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-5175200IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-6177199IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-6178198IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-7179202IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.497179201IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
GRSPNSRRRE SGRSSDERTD RRHGTESRFR AENRDYGYSR FGINEADQFR DHNERLREAD  60
IQRRSHGTES RFHQHNREKE YSGSRLNETG QTRDHKESGA QQQRLRNVEM QRRSHETESR  120
FQQQKRARAS DFDERTQMRH EQAQSSRPGA KDCLNYRNTG WCNYGKRCHF NHPPHFPPVC  180
KFFLKGTCEY GSNCRFKHTE DEDFAEPVLF NAQARIPDRR ASESTWRFDE GRHETESRSM  240
PEIKRARTIP DSQEHASREK DKDLVDGIKR AKMEKMPIKE AENNLQQQEL REEMPENRNI  300
DAQQNLEEQR RIDIEKQREE ERLRLEQIQT TVQFDELGRP RELMKDLGFR DCDGF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10009455m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024007987.16e-54putative zinc finger CCCH domain-containing protein 9
TrEMBLV4KRH60.0V4KRH6_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006415561.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15746914
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29600.15e-28C3H family protein