PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thhalv10009016m | ||||||||
Common Name | EUTSA_v10009016mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 150aa MW: 16686.1 Da PI: 8.2121 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.9 | 0.0001 | 37 | 76 | 10 | 54 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + R d++ ++++ L++++ + +K + a++L A++YI L Thhalv10009016m 37 KERKDKVGERISALQQIVSPY-----GKTDTASVLLDAMHYIEFL 76 67899999***********99.....9***************988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.347 | 27 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.3E-8 | 27 | 96 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.31E-4 | 32 | 81 | No hit | No description |
SMART | SM00353 | 0.0042 | 35 | 82 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.26E-10 | 37 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 150 aa Download sequence Send to blast |
MEFSRYAGMM MENKRNVCSL EESSIKRHKS DLSFNSKERK DKVGERISAL QQIVSPYGKT 60 DTASVLLDAM HYIEFLHEQV KVLSAPYLQT MSAATQVELE QSSLRNRGLC LVPMEYTVGV 120 AQSNGADIWA PVKTPPSPAL NVMSQSPFR* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Thhalv10009016m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK353054 | 0.0 | AK353054.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-13-J10. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006417995.1 | 1e-109 | transcription factor bHLH153 | ||||
Swissprot | Q7XJU2 | 1e-96 | BH153_ARATH; Transcription factor bHLH153 | ||||
TrEMBL | E4MX07 | 1e-108 | E4MX07_EUTHA; mRNA, clone: RTFL01-13-J10 | ||||
TrEMBL | V4L996 | 1e-108 | V4L996_EUTSA; Uncharacterized protein | ||||
STRING | XP_006417995.1 | 1e-108 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3316 | 27 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G05710.5 | 5e-99 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thhalv10009016m |
Entrez Gene | 18994297 |
Publications ? help Back to Top | |||
---|---|---|---|
|