PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10008861m
Common NameEUTSA_v10008858mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family YABBY
Protein Properties Length: 189aa    MW: 21121.9 Da    PI: 9.9083
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10008861mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY248.11.7e-7621642170
            YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesasts 95 
                      +++ sse+vCyv+CnfC+tilavsvP++slf++vtvrCGhCt+lls+n+ ++ ++++a   ++++l+++++ +  v+++++ s   ++++ st+
  Thhalv10008861m   2 SIDLSSERVCYVHCNFCTTILAVSVPYASLFTLVTVRCGHCTNLLSLNIGVSLHQTSAPP-IHQDLQHKQHITSPVTRKDFGSSSRSSNHFSTT 94 
                      67789*************************************************999988.455555555555555566665555555544444 PP

            YABBY  96 vsseklsen.edeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                            sen +++++pr+pp irPPekrqrvPsaynrfikeeiqrika+nP+ishreafs+aaknWahfP+ihfgl
  Thhalv10008861m  95 L-----SENvDRDQAPRMPP-IRPPEKRQRVPSAYNRFIKEEIQRIKAGNPEISHREAFSTAAKNWAHFPHIHFGL 164
                      4.....44414456788888.9****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046903.6E-736164IPR006780YABBY protein
SuperFamilySSF470951.27E-7109157IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.3E-4112158IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
GO:0010158Biological Processabaxial cell fate specification
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MSIDLSSERV CYVHCNFCTT ILAVSVPYAS LFTLVTVRCG HCTNLLSLNI GVSLHQTSAP  60
PIHQDLQHKQ HITSPVTRKD FGSSSRSSNH FSTTLSENVD RDQAPRMPPI RPPEKRQRVP  120
SAYNRFIKEE IQRIKAGNPE ISHREAFSTA AKNWAHFPHI HFGLKLDGNK KGKQLDQTVA  180
GQKSNGYY*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10008861m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533260.0AK353326.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-29-D23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006417684.11e-141putative axial regulator YABBY 2 isoform X2
SwissprotQ9XFB01e-121YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBLV4L1881e-139V4L188_EUTSA; Uncharacterized protein
STRINGXP_006417685.11e-134(Eutrema salsugineum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.11e-117YABBY family protein
Publications ? help Back to Top
  1. Sacharowski SP, et al.
    SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development.
    Plant Cell, 2015. 27(7): p. 1889-906
    [PMID:26106148]