 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Thhalv10008672m |
| Common Name | EUTSA_v10008672mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 231aa MW: 26694.8 Da PI: 4.8759 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Thhalv10008672m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 54.8 | 1.6e-17 | 68 | 121 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++t+ ql+ Lee Fe+++ + e++ LA+klgL+ +qV vWFqNrRa+ k
Thhalv10008672m 68 KKRKLTPVQLRLLEESFEEEKRLEPERKLWLAEKLGLQPSQVAVWFQNRRARFK 121
56699***********************************************98 PP
|
| 2 | HD-ZIP_I/II | 113.7 | 1.1e-36 | 68 | 158 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
kkr+l+ q++lLEesFeee++LeperK la++Lglqp qvavWFqnrRAR+ktkqlE+d+++Lk++y +lk++++ L ++e+L+++++
Thhalv10008672m 68 KKRKLTPVQLRLLEESFEEEKRLEPERKLWLAEKLGLQPSQVAVWFQNRRARFKTKQLEQDCDSLKASYAKLKTDRDILFLQNETLKNKVA 158
9**************************************************************************************9886 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 231 aa
Download sequence Send
to blast |
MENSNTDSEF LFWFQNQKQS HSHNFASSCF PPSSHSAFYG SSSMSNTETN TVDDEDVFES 60
YKMREITKKR KLTPVQLRLL EESFEEEKRL EPERKLWLAE KLGLQPSQVA VWFQNRRARF 120
KTKQLEQDCD SLKASYAKLK TDRDILFLQN ETLKNKVALL KEKLKMKDNL ETQPMEAEKL 180
GEEGSSVKSD DNTQCSEEEE ALGNQYSFPE LAALGFYYDP TLAASNLRLW *
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 115 | 123 | RRARFKTKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC000348 | 1e-120 | AC000348.2 Genomic sequence for Arabidopsis thaliana BAC T7N9 from chromosome I, complete sequence. |
| GenBank | CP002684 | 1e-120 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
