 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Thhalv10008432m |
| Common Name | EUTSA_v10008428mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 279aa MW: 31045.3 Da PI: 10.271 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Thhalv10008432m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 355.5 | 1.2e-108 | 1 | 278 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepa.aslkenlglqlmssiaerdaki....rernlalsekkaavaerd....maflqrdkalaernkalverdnkllall 85
mdddg+ rn+gyyepa a++k nlglqlmssi +r++k+ r+ nl ++++++++++ + m++ +++++ +++k++++l
Thhalv10008432m 1 MDDDGF--RNWGYYEPAaATFKGNLGLQLMSSI-DRNTKPflpgRDPNL-MIGSNGSYHHPEppihMSY----NWINQ-------QKDKFFNML 79
99**99..9*******999**************.9**************.**********995555555....*****.......899****** PP
GAGA_bind 86 lvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvk 179
+v+++ +++ +vl++t+s+ s+q+ +l + ++++++e++p+++++e +++kk+k++++ ++ +k+kk +k+k+++ s+++++
Thhalv10008432m 80 PVTTT-----SHYGNVLPETSSAPSMQM----NL----HNHHHHHQTEVNPVKCEEEIVQTKKRKSNSKAGTATKAKKPRKPKEEN--SNNNNN 158
*9997.....56788*************....34....34455688999*****99999999999999999************954..444445 PP
GAGA_bind 180 kesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLa 273
++ +r+k kks+dlv+ngvs+D+s+lPvP+C+CtGa++qCY+WG+GGWqSaCCtt+iS++PLP+stkrrgaRi+grKmSqgafkk+LekLa
Thhalv10008432m 159 TSV--SRVKPAKKSVDLVINGVSMDISGLPVPICTCTGAPQQCYRWGCGGWQSACCTTNISMHPLPMSTKRRGARISGRKMSQGAFKKVLEKLA 250
555..689************************************************************************************** PP
GAGA_bind 274 aeGydlsnpvDLkdhWAkHGtnkfvtir 301
++G++++np+DLk+hWA+HGtnkfvtir
Thhalv10008432m 251 SDGFNFGNPIDLKSHWARHGTNKFVTIR 278
***************************8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 279 aa
Download sequence Send
to blast |
MDDDGFRNWG YYEPAAATFK GNLGLQLMSS IDRNTKPFLP GRDPNLMIGS NGSYHHPEPP 60
IHMSYNWINQ QKDKFFNMLP VTTTSHYGNV LPETSSAPSM QMNLHNHHHH HQTEVNPVKC 120
EEEIVQTKKR KSNSKAGTAT KAKKPRKPKE ENSNNNNNTS VSRVKPAKKS VDLVINGVSM 180
DISGLPVPIC TCTGAPQQCY RWGCGGWQSA CCTTNISMHP LPMSTKRRGA RISGRKMSQG 240
AFKKVLEKLA SDGFNFGNPI DLKSHWARHG TNKFVTIR*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
