PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10008387m
Common NameEUTSA_v10008387mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB_related
Protein Properties Length: 289aa    MW: 32177.9 Da    PI: 9.4448
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10008387mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.57.3e-14556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT+eE+e l+ +v+++G+g Wk I r         +R+  ++k++w+++
  Thhalv10008387m  5 KLKWTAEEEEALLAGVTKHGPGKWKNILRDPDfadqlSNRSNIDLKDKWRNL 56
                     689**********************************9************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.579162IPR017930Myb domain
SuperFamilySSF466897.18E-16359IPR009057Homeodomain-like
SMARTSM007171.4E-7459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-14556IPR009057Homeodomain-like
CDDcd116602.19E-20756No hitNo description
PfamPF139217.8E-9865No hitNo description
SMARTSM005261.2E-17121187IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.102.2E-11122191IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150423.081123192IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467854.24E-14124192IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005387.7E-10125185IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MGNQKLKWTA EEEEALLAGV TKHGPGKWKN ILRDPDFADQ LSNRSNIDLK DKWRNLSVAP  60
DIQGSKDKIR TPKIKAAAFQ LAARAIITPT PSANTSLVDP LPRTRSSDLS IDDSCNIVVD  120
AKNAPRYDGM IFEALSALPD ANGSDVNAIF NFIQQKRHEV PPNFKRILGS RLRRLAAQGK  180
LEKTQNFYKM NDHSLVIRTP LVARPKEINV KPRQTNSPRP AVSQERVCDA SKSAAFKLVE  240
VDMKLDAVEV AMEDTERMIK LAEEAEFILL LAKELHEKCS QGMLVEIN*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10008387m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006416694.10.0telomere repeat-binding factor 4 isoform X3
SwissprotF4I7L11e-133TRB4_ARATH; Telomere repeat-binding factor 4
TrEMBLV4KYH50.0V4KYH5_EUTSA; Uncharacterized protein
STRINGXP_006416694.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23212875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.11e-125MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]