PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

MYB_related

Protein Properties

Length: 290aa MW: 33110 Da PI: 9.8273

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10008382m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44	5.1e-14	63	107	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E++++++a +++ + Wk+I + +g +t q++s+ qky Thhalv10008382m 63 RENWTEQEHDKFLEALHLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 107 789***************77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.27E-16	57	113	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.507	58	112	IPR017930	Myb domain
TIGRFAMs	TIGR01557	8.3E-18	61	110	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	8.8E-7	61	113	IPR009057	Homeodomain-like
SMART	SM00717	2.9E-11	62	110	IPR001005	SANT/Myb domain
Pfam	PF00249	9.2E-12	63	107	IPR001005	SANT/Myb domain
CDD	cd00167	6.77E-9	65	108	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009651	Biological Process	response to salt stress
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MVSVNPSQAH CFPMNMNLPG FNTLPHTAAP ATMIPVSVRN NTMSFCEDPT KKIRKPYTIT 60 KSRENWTEQE HDKFLEALHL FDRDWKKIEA FVGSKTVIQI RSHAQKYFLK VQKNGTNEHL 120 PPPRPKRKAN HPYPQKASKS VALTSSNALL EHDYLYSTDS HPVISTPKHE LMRRDVITSN 180 PVIKEELGVP ENSCSTSIRR DKQKTRTVTE INDQGSCEKP HRVMPNFAEV YSFLGSVFDP 240 KTTGHVQRLK HMDPINLETV LLLMRNLSVN LTRPEFEEQV IVSLRLVTF*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10008382m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006418431.1	0.0	protein REVEILLE 3
Swissprot	Q6R0H0	1e-164	RVE3_ARATH; Protein REVEILLE 3
TrEMBL	V4LAJ1	0.0	V4LAJ1_EUTSA; Uncharacterized protein
STRING	XP_006418431.1	0.0	(Eutrema salsugineum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01520.1	1e-166	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Thhalv10008382m
Entrez Gene	18994681

Publications ? help Back to Top
Manfield IW, et al. Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis. Nucleic Acids Res., 2006. 34(Web Server issue): p. W504-9 [PMID:16845059] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761] Huang KC,Lin WC,Cheng WH Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis. BMC Plant Biol., 2018. 18(1): p. 40 [PMID:29490615]