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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10008374m | ||||||||
Common Name | EUTSA_v10008382mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | MYB_related | ||||||||
Protein Properties | Length: 290aa MW: 33182.9 Da PI: 9.8992 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44 | 5.1e-14 | 63 | 107 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E++++++a +++ + Wk+I + +g +t q++s+ qky Thhalv10008374m 63 RENWTEQEHDKFLEALHLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 107 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.27E-16 | 57 | 113 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.507 | 58 | 112 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 8.3E-18 | 61 | 110 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 8.8E-7 | 61 | 113 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-11 | 62 | 110 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.2E-12 | 63 | 107 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.55E-9 | 65 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MVSVNPSQAH CFPMNMNLPG FNTLPHTAAP ATMIPVSVRN NTMSFCEDPT KKIRKPYTIT 60 KSRENWTEQE HDKFLEALHL FDRDWKKIEA FVGSKTVIQI RSHAQKYFLK VQKNGTNEHL 120 PPPRPKRKAN HPYPQKASKS VALTSSNALL EHDYLYSTDS HPVISTPKHE LMRRDVITSN 180 PVIKEELGVP ENSCSTSIRR DKQKTRTVTE INDQGSCEKP HRVMPNFAEV YSFLGSVFDP 240 KTTGHVQRLK HMDPINLETV LLLMRNLSVN LTRPEFEEQR RLILSYNAN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10008374m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006418431.1 | 0.0 | protein REVEILLE 3 | ||||
Swissprot | Q6R0H0 | 1e-170 | RVE3_ARATH; Protein REVEILLE 3 | ||||
TrEMBL | V4KZJ0 | 0.0 | V4KZJ0_EUTSA; Uncharacterized protein | ||||
STRING | XP_006418431.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1290 | 28 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01520.1 | 1e-172 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10008374m |
Entrez Gene | 18994681 |
Publications ? help Back to Top | |||
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