PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

MYB_related

Protein Properties

Length: 295aa MW: 32183.7 Da PI: 6.7299

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10008346m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40.7	5.6e-13	103	147	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+ E+++++ + ++ G+g+Wk I+r + k Rt+ q+ s+ qky Thhalv10008346m 103 PWTENEHKRFLLGLQKVGKGDWKGISRNFVKSRTPTQVASHAQKY 147 7*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.656	96	152	IPR017930	Myb domain
SuperFamily	SSF46689	1.64E-16	98	152	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.6E-17	99	150	IPR006447	Myb domain, plants
SMART	SM00717	5.9E-7	100	150	IPR001005	SANT/Myb domain
CDD	cd00167	3.54E-7	103	148	No hit	No description
Pfam	PF00249	1.5E-9	103	147	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.5E-10	103	147	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MAAVSSSSET GGGEAAENRE IMLFGVRVVV DPMRKCVSLN NLSDYEKSSP EEEIPKIGDG 60 DGEDKNEPDL IAGAAVAGYA SANEAVQISS SSGGNRERKR GIPWTENEHK RFLLGLQKVG 120 KGDWKGISRN FVKSRTPTQV ASHAQKYFLR RTNLNRRRRR SSLFDITTET VTGMPMEQDQ 180 VHHAQDNLSL PETNISSGHQ VMQVFPEVAR TDKAPQSPFH SNDSSSNLVH PVPVTFQSNP 240 AFNLNTDAAI PAQLSLNLSL SFNLNEQSNS RHPAFTMMPS FSDGDSNSSI IRVA*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00149	DAP	Transfer from AT1G19000	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10008346m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353076	0.0	AK353076.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-16-O16.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006416544.1	0.0	transcription factor MYB1R1
Refseq	XP_024008815.1	0.0	transcription factor MYB1R1
Swissprot	Q2V9B0	2e-62	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	E4MX29	0.0	E4MX29_EUTHA; mRNA, clone: RTFL01-16-O16
TrEMBL	V4KXY1	0.0	V4KXY1_EUTSA; Uncharacterized protein
STRING	XP_006416544.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2461	26	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19000.2	1e-112	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Thhalv10008346m
Entrez Gene	18993016

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]