PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thhalv10008338m | ||||||||
Common Name | EUTSA_v10008338mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 296aa MW: 33023 Da PI: 8.59 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 64.1 | 1.6e-20 | 212 | 246 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C ttkTp+WR+gp+g+ktLCnaCG+++r+ +l Thhalv10008338m 212 CTHCETTKTPQWREGPNGPKTLCNACGVRFRSGRL 246 *******************************9885 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 2.66E-15 | 205 | 268 | No hit | No description |
SMART | SM00401 | 7.3E-20 | 206 | 256 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 2.2E-15 | 210 | 243 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 12.084 | 210 | 242 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 1.66E-16 | 211 | 260 | No hit | No description |
Pfam | PF00320 | 2.5E-18 | 212 | 246 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 212 | 237 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 296 aa Download sequence Send to blast |
MNWLPEEDLK GFLDDFFDDF LPEDIDTTNG EGDWDAKFQD LEPPPMNMFP SLPSELTSCA 60 ISNGGRVGTQ KTVPILKQST SSGALSGINS ALHQSSSPPD IKVSKLFQSS SPVSVLESSD 120 GSFSPQNSRS QRLTFTVKGM RSKRKRPTTP RFRYLYPFES SKPEKLTPGE SESETCYSFE 180 RHAKKKRKIL PTSHTVSSIA EASNSDGMVR KCTHCETTKT PQWREGPNGP KTLCNACGVR 240 FRSGRLVPEY RPASSPTFIP SVHSNSHRKI IEMRRTDQGQ FDTSMELNDK REVQF* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00130 | DAP | Transfer from AT1G08010 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Thhalv10008338m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006417739.1 | 0.0 | GATA transcription factor 11 isoform X2 | ||||
Refseq | XP_006417741.1 | 0.0 | GATA transcription factor 11 isoform X2 | ||||
Refseq | XP_024008517.1 | 0.0 | GATA transcription factor 11 isoform X1 | ||||
Refseq | XP_024008518.1 | 0.0 | GATA transcription factor 11 isoform X2 | ||||
Swissprot | Q6DBP8 | 1e-143 | GAT11_ARATH; GATA transcription factor 11 | ||||
TrEMBL | V4L1D5 | 0.0 | V4L1D5_EUTSA; Uncharacterized protein | ||||
STRING | XP_006417739.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1681 | 25 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G08010.2 | 1e-127 | GATA transcription factor 11 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thhalv10008338m |
Entrez Gene | 18994072 |