PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10008283m
Common NameEUTSA_v10008283mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB_related
Protein Properties Length: 309aa    MW: 34186.9 Da    PI: 6.0848
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10008283mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.11.3e-1062101344
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      ++T+eE++l+++ ++ +G++ W +Ia++++ g+t++++k  w
  Thhalv10008283m  62 SFTPEEEDLIIKMHAAMGSR-WPLIAQHLP-GKTEEEVKMIW 101
                      79******************.*********.*******9655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.64E-1244113IPR009057Homeodomain-like
PROSITE profilePS5129415.2355109IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.3E-1656109IPR009057Homeodomain-like
SMARTSM007171.4E-1059107IPR001005SANT/Myb domain
CDDcd001671.66E-862105No hitNo description
PfamPF002499.8E-1062102IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MVRSCSSKSK NPWAEEENPV QKFAFASASK NGSATPKKIG LKKCGKSCRV RKSDNSGSKH  60
ESFTPEEEDL IIKMHAAMGS RWPLIAQHLP GKTEEEVKMI WNSKLKKKLS QMGIDHVTHR  120
PFSHVLAEYG NINGGGTLNP NPLNQTGSLG RNHSLNEDPH QQQPDGSGDL MFHLQAIKLM  180
TESSNQIKPE STFMYASSSS SNSSPPLFSS TCSTIAQENS EVNFTWSDFL LDQESFHENQ  240
QIHPDQELDN LFGSDFSEAA ASTRANTSIP ASQIEEESSS NGFVESILAK EKELFLGYNN  300
YLEQPFHF*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00148DAPTransfer from AT1G18960Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10008283m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934660.0AB493466.1 Arabidopsis thaliana At1g18960 mRNA for hypothetical protein, partial cds, clone: RAAt1g18960.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006416547.10.0transcription factor MYB35
TrEMBLV4KB200.0V4KB20_EUTSA; Uncharacterized protein
STRINGXP_006416547.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148221518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18960.11e-171MYB_related family protein