PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10008279m
Common NameEUTSA_v10008279mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 309aa    MW: 33144.6 Da    PI: 6.5125
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10008279mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.45.9e-09161205554
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h+++Er RR+ri +++  L+el+P+       K + a++  + v+Y+k L
  Thhalv10008279m 161 HSIAERLRRERIAERIRALQELVPTV-----SKTDRAAMIDEIVDYVKFL 205
                      99***********************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-14154215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.025156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-14158215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-6161205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.1E-10162211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MANNNNPHDN LSDQSPSDDF FEQILGISNF SASSGSGLSG LAGGLSGVGP PPMMLQLGSG  60
DEGNHNHMGA IGAGGPLGFH NQMFPLGLSL DQGKGHGFLK PEGVHGSGKR FQDDVVDNRC  120
SSMKPVFHGQ PMSQPAPPMP HQQSSIRPRV RARRGQATDP HSIAERLRRE RIAERIRALQ  180
ELVPTVSKTD RAAMIDEIVD YVKFLRLQVK VLSMSRLGGA GAVAPLVTEM PLSSSIEDET  240
QGVWEKWSND GTELQVAKLM EENVGAAMQL LQSKALCIMP ISLAMAIYHS QPQDTSSSII  300
KPEMNPPP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165170RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10008279m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531530.0AK353153.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-21-H10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006418274.10.0transcription factor bHLH7
SwissprotQ93Y001e-173BH007_ARATH; Transcription factor bHLH7
TrEMBLE4MXA60.0E4MXA6_EUTHA; mRNA, clone: RTFL01-21-H10
TrEMBLV4L2X20.0V4L2X2_EUTSA; Uncharacterized protein
STRINGXP_006418274.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16112888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03040.11e-167bHLH family protein