PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10008213m
Common NameEUTSA_v10008213mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family Dof
Protein Properties Length: 322aa    MW: 34923.6 Da    PI: 9.7647
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10008213mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.52.9e-383494262
           zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                     ++ +lkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGg+ rknk+++
  Thhalv10008213m 34 PQPQLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGSYRKNKRVK 94
                     67899*****************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027013.5E-333792IPR003851Zinc finger, Dof-type
ProDomPD0074783.0E-273892IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.9013892IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104076IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MPIISSPNTN PLASMQSKNM IVASSHQQQQ PQQPQPQLKC PRCDSSNTKF CYYNNYSLSQ  60
PRHFCKACKR YWTRGGTLRN VPVGGSYRKN KRVKRPATAT AASTASTTTT TNSSSPNNPH  120
QISHFSSMNH HPLFYGLSDH VSSRKNPPMI PSRFSDSSKT SSLSGLESEF LSSGFSGLSS  180
LGLGLPHHMS HDHTINGSFI NNSTTNKPFL LSGLFGSSMS SSSSTLLQHQ HRPMNNGGDI  240
FGQSHLQTLA SLQDLHVGVN NEDMNKEGKL DQISGNTNEF MSSSSLDPSN YNSIWNNASA  300
VNGAWLDPTN NNVGSSLTSL I*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10008213m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3530650.0AK353065.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-20-D16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006415674.20.0dof zinc finger protein DOF1.4
SwissprotQ9FZA41e-154DOF14_ARATH; Dof zinc finger protein DOF1.4
TrEMBLV4KVJ20.0V4KVJ2_EUTSA; Uncharacterized protein
STRINGXP_006415674.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47092650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28310.21e-125Dof family protein