PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10008002m
Common NameEUTSA_v10008002mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 364aa    MW: 40085.5 Da    PI: 6.141
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10008002mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.43.4e-10212260355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  Thhalv10008002m 212 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 260
                      58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.1E-17207276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.21E-11207264No hitNo description
PROSITE profilePS5088815.485209259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-16210277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-7212260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10215265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MGGESNEDEM RFKHGDDESG ISRVGITSVP LYAKADPFFS SADWDPVVNG GGFSSSHYPS  60
MAMDNPGMSC FSHYPPSSGS GYPDMPASLV PFGDCGGGGQ IGHFLGSDKK GENVGRLIRA  120
GESHEDHHQV SDDGVLGASP TRKRRQPEAE SQRNKKAVEE FQEDPQRGSD QSQKKHKNDQ  180
SKETMNKESS QSEEAPKENY IHMRARRGQA TNSHSLAERV RREKISERMR LLQELVPGCN  240
KITGKAVMLD EIINYVQSLQ QQVEFLSMKL ATVNPELNVD IDRILAKDLL QSRDRNTPTL  300
GLNPFTGFQG TIPNISTTAN PQYHPLPQTT LESELQSLYQ MGFVSNPSTM SSFSPNGRLK  360
PEL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140145TRKRRQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:24130508}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10008002m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2218060.0AK221806.1 Arabidopsis thaliana mRNA for bHLH transcription factor like protein, complete cds, clone: RAFL21-86-B04.
GenBankBT0126550.0BT012655.1 Arabidopsis thaliana At1g10120 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006417495.10.0transcription factor bHLH74
SwissprotQ6NKN90.0BH074_ARATH; Transcription factor bHLH74
TrEMBLV4L7V00.0V4L7V0_EUTSA; Uncharacterized protein
STRINGXP_006417495.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51962849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]