 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Thhalv10007764m |
| Common Name | EUTSA_v10007764mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
|
| Family |
C3H |
| Protein Properties |
Length: 413aa MW: 44736.4 Da PI: 5.0097 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Thhalv10007764m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 19 | 2.5e-06 | 365 | 387 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26
++C +f t C++G++C++ H+
Thhalv10007764m 365 KPCLYFNTTRGCRHGANCSYQHD 387
69********************6 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 413 aa
Download sequence Send
to blast |
MRALHKSKRV SWPPDFKLCQ VRLFISEDSP SQVGSESQDH LQAKSSCASH PSDDNLPPGF 60
GGSLSPNESQ IKLSDIPVIK WKCSVRILFD EELRVAAGDE SKEVEAQNQR ELRVLEAFYP 120
GASAIPTNPA VPADVENSDR DDQQTIVIPI LPVEDDDTTT DSASDFSTQS GVDVGTAPSI 180
TDENQSSAST FPAGSEIMAA LSAISNSKEQ GCSMIDQDLL IKILSNPKLV ENLVANCGGA 240
GSVSSNASSL YPSSTPEANG VVTTTPACSN GQYYPQPTVT HIPPMVYHPP APSDQPNYGA 300
PPARDASYYK SLIQQHGGER QETPQAQQHL GYRYNLQPGG GPNPEMVNSN NNNQRPRDSK 360
PKIMKPCLYF NTTRGCRHGA NCSYQHDATA YQPRNINNSE MPSAKRMRFD RD*
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK221579 | 0.0 | AK221579.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-83-G10. |
| GenBank | BT025557 | 0.0 | BT025557.1 Arabidopsis thaliana At1g19860 mRNA, complete cds. |
