PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10007696m

Common Name

EUTSA_v10007696mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

bHLH

Protein Properties

Length: 430aa MW: 47088.8 Da PI: 5.9801

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10007696m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.2	8.1e-05	272	319	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++ +++ L++l+P + +k Ka +L + ++Y++sLq Thhalv10007696m 272 NSHSLAERVRREK-SKRMKFLQDLVPGC----DKVTGKAVMLDEIINYVQSLQ 319 58********9.56899****9....555***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.49E-12	267	336	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.22E-8	267	323	No hit	No description
PROSITE profile	PS50888	9.826	268	318	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-11	270	332	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.1E-4	275	324	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009637	Biological Process	response to blue light
GO:0009911	Biological Process	positive regulation of flower development
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence Send to blast
MNLSEDKNEF AGDNSNRDND GVKNFDSVNT PVDWRISASN PPVSYHLENP MPSICQSSSS 60 PSQMMDSFRQ NLWYDGGFNV HSTDAGNDDS TSFRGNIDRP LEMGWSMAQF PADSGFTERA 120 AKFSLFGCGS FSELMMNQQG APESNGLFLQ DTEVASGSKR DNDGPASKLV KDRSNGPGNV 180 SEDSQSSGGN GHVKCGETSS SSKKRNRIGK DFDPDQSRRA QQSGEEQEDK KNKKDEQSPN 240 SNADKTNSGK QVSDPLKDGY IHMRARRGQA TNSHSLAERV RREKSKRMKF LQDLVPGCDK 300 VTGKAVMLDE IINYVQSLQC QIEFLSMKLS TVNPPLDFGL ESLLAKDALQ LSAPALPQSM 360 SMLYPPLSYP SQTGIMQPNF SSMSPMNGGL KRQETHGYKS DHHNIVHMNH GTGTAPDHED 420 ATANTKVEP*

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence Send to blast

MNLSEDKNEF AGDNSNRDND GVKNFDSVNT PVDWRISASN PPVSYHLENP MPSICQSSSS  60
PSQMMDSFRQ NLWYDGGFNV HSTDAGNDDS TSFRGNIDRP LEMGWSMAQF PADSGFTERA  120
AKFSLFGCGS FSELMMNQQG APESNGLFLQ DTEVASGSKR DNDGPASKLV KDRSNGPGNV  180
SEDSQSSGGN GHVKCGETSS SSKKRNRIGK DFDPDQSRRA QQSGEEQEDK KNKKDEQSPN  240
SNADKTNSGK QVSDPLKDGY IHMRARRGQA TNSHSLAERV RREKSKRMKF LQDLVPGCDK  300
VTGKAVMLDE IINYVQSLQC QIEFLSMKLS TVNPPLDFGL ESLLAKDALQ LSAPALPQSM  360
SMLYPPLSYP SQTGIMQPNF SSMSPMNGGL KRQETHGYKS DHHNIVHMNH GTGTAPDHED  420
ATANTKVEP*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269\|PubMed:23161888, ECO:0000269\|PubMed:24130508}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10007696m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006415908.1	0.0	transcription factor bHLH76
Swissprot	Q9C670	0.0	BH076_ARATH; Transcription factor bHLH76
TrEMBL	V4MR96	0.0	V4MR96_EUTSA; Uncharacterized protein
STRING	XP_006415908.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16689	10	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26260.2	0.0	cryptochrome-interacting basic-helix-loop-helix 5

Link Out ? help Back to Top
Phytozome	Thhalv10007696m
Entrez Gene	18992446

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]