PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10007665m
Common NameEUTSA_v10007665mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NAC
Protein Properties Length: 439aa    MW: 49716.5 Da    PI: 5.7125
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10007665mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1189e-3751393128
              NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      pG+ F+P deelv +yL++k++g++  +e  i+ev+i++++Pw L   +k+k+++  wyfFs+r++kya+g+r++r+t+sg Wk tg++ +v++
  Thhalv10007665m   5 PGYGFRPYDEELVGYYLRNKIQGNTRLVEGSISEVNICSFDPWILClkSKIKSRDPIWYFFSRRENKYASGNRQSRTTRSGSWKLTGESVDVKD 98 
                      9************************888888**************64348888888************************************** PP

              NAM  95 k.......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +       kg+ +g k+ Lvf +g++++ +k+dW m+e + 
  Thhalv10007665m  99 QwgiwsgiKGKIIGQKRFLVFLRGKTSQKTKSDWAMQELHY 139
                      *****9999999**************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100541.5983157IPR003441NAC domain
SuperFamilySSF1019411.44E-394157IPR003441NAC domain
PfamPF023651.3E-185138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MEDKPGYGFR PYDEELVGYY LRNKIQGNTR LVEGSISEVN ICSFDPWILC LKSKIKSRDP  60
IWYFFSRREN KYASGNRQSR TTRSGSWKLT GESVDVKDQW GIWSGIKGKI IGQKRFLVFL  120
RGKTSQKTKS DWAMQELHYT LLPEDQRTYV ICRLEYKGHI MNIPSANATD PTLPFVPNMT  180
NSAGSVVNLS LQAHSGSFNT FSEYDSANQG QQFSGNFNMQ QSFQGNSGSS NHFSEYDLAN  240
QGHWFSGDLN LQQQVPYSAP YEDDIWRQLV EDNCDSLIDE RTYTQKNCSD YRPKNPVTGV  300
FADDSSSDID TDSTVCRDTW SSTDSVGSSD GPYLTPIDDI PLLSTIEPLH NNEAQEKPKQ  360
LTLQSQGKEK VIATQKSECE WIVAKDSVKK VPSTTAVKQS WIVLEEVSQR NSQWSHLKNM  420
IIGFLLFISI ISWIILVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-21513617137Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250|UniProtKB:Q949N0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10007665m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, drought stress and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0073231e-33AC007323.5 Genomic sequence for Arabidopsis thaliana BAC T25K16 from chromosome I, complete sequence.
GenBankAF1965661e-33AF196566.1 Arabidopsis thaliana chromosome I, partial sequence.
GenBankCP0026841e-33CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006418366.10.0NAC domain-containing protein 1 isoform X2
SwissprotQ0WV960.0NAC1_ARATH; NAC domain-containing protein 1
TrEMBLV4KZD40.0V4KZD4_EUTSA; Uncharacterized protein
STRINGXP_006418366.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76581640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01010.11e-155NAC domain containing protein 1
Publications ? help Back to Top
  1. Davuluri RV, et al.
    AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors.
    BMC Bioinformatics, 2003. 4: p. 25
    [PMID:12820902]
  2. Palaniswamy SK, et al.
    AGRIS and AtRegNet. a platform to link cis-regulatory elements and transcription factors into regulatory networks.
    Plant Physiol., 2006. 140(3): p. 818-29
    [PMID:16524982]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]