PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

bHLH

Protein Properties

Length: 457aa MW: 50134.5 Da PI: 6.6391

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10007594m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.3	0.00031	337	375	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YI+ Lq Thhalv10007594m 337 RKEKLGDRIAALQQLVSPF-----GKTDTASVLMEAIGYINFLQ 375 7788899*******998.....8***************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.471	325	374	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.15E-10	335	388	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.52E-5	335	379	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.2E-8	339	382	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence Send to blast
MDSANMHQLR QDQLQLVGSS SSSSSLDNNS DPSCYVASSA HQWNPGGISL NSERLSQKYN 60 IEMLNRRDHN NSNNNNTSEC MSLSNIHNHS LIQQQDFPLQ WPHDQSSYHH HEGLHKIKEE 120 LSSSTTSDHQ EGLPKFTDML NSPVITNYLK INEHKDYTEK LLLNTISSGF PINGDYTSSL 180 PSSSSSSSSS LPASQSHRGS FSQIYPSVNI SSLSESRGMS MDMSNIPRPF DMNMQVLDGR 240 LLEGNVLVPP LNSQEISNFG MSRGSFSPFG LPFHHHLQQT LHHPSSSPTH QTEMFSNEPQ 300 ASEGKRQNFL MATKAGENAS KKPRVESRSS CPPFKVRKEK LGDRIAALQQ LVSPFGKTDT 360 ASVLMEAIGY INFLQNQIET LSVPYMRASR NRPGKASQLG SLPQEGDEEE TRDLRSRGLC 420 LVPLSCMTYV TGDGGDGGCG VGNGFWPTPP GFGGGT*

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence Send to blast

MDSANMHQLR QDQLQLVGSS SSSSSLDNNS DPSCYVASSA HQWNPGGISL NSERLSQKYN  60
IEMLNRRDHN NSNNNNTSEC MSLSNIHNHS LIQQQDFPLQ WPHDQSSYHH HEGLHKIKEE  120
LSSSTTSDHQ EGLPKFTDML NSPVITNYLK INEHKDYTEK LLLNTISSGF PINGDYTSSL  180
PSSSSSSSSS LPASQSHRGS FSQIYPSVNI SSLSESRGMS MDMSNIPRPF DMNMQVLDGR  240
LLEGNVLVPP LNSQEISNFG MSRGSFSPFG LPFHHHLQQT LHHPSSSPTH QTEMFSNEPQ  300
ASEGKRQNFL MATKAGENAS KKPRVESRSS CPPFKVRKEK LGDRIAALQQ LVSPFGKTDT  360
ASVLMEAIGY INFLQNQIET LSVPYMRASR NRPGKASQLG SLPQEGDEEE TRDLRSRGLC  420
LVPLSCMTYV TGDGGDGGCG VGNGFWPTPP GFGGGT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10007594m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC012375	0.0	AC012375.3 Genomic sequence for Arabidopsis thaliana BAC T22C5 from chromosome I, complete sequence.
GenBank	CP002684	0.0	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006415743.1	0.0	transcription factor bHLH110 isoform X1
Swissprot	Q9SFZ3	0.0	BH110_ARATH; Transcription factor bHLH110
TrEMBL	V4MQV9	0.0	V4MQV9_EUTSA; Uncharacterized protein
STRING	XP_006415743.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9351	25	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	0.0	bHLH family protein

Link Out ? help Back to Top
Phytozome	Thhalv10007594m
Entrez Gene	18992300

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]