PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10007538m
Common NameEUTSA_v10007538mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 473aa    MW: 51106.6 Da    PI: 9.2449
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10007538mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.3e-0581103123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C+ C+k F r  nL+ H r H
  Thhalv10007538m  81 FICEVCNKGFQREQNLQLHRRGH 103
                      89*******************88 PP
2zf-C2H214.20.00013157179123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC++C+k++  +s+ k H +t+
  Thhalv10007538m 157 FKCEKCSKRYAVQSDWKAHSKTC 179
                      89*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.18E-780103No hitNo description
Gene3DG3DSA:3.30.160.605.1E-680103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121712.2E-581103IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.005281103IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9981103IPR007087Zinc finger, C2H2
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
SMARTSM00355110122152IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.8E-6145178IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.18E-7152177No hitNo description
SMARTSM0035588157177IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MSSSYNNTIS SSSTQSFLLS GAAIGANNFN RDETAMTMIQ QPNSVAPTPP PKKRRNQPGN  60
PNPDAEVIAL SPKTIMATNR FICEVCNKGF QREQNLQLHR RGHNLPWKLK QKSTKEVRRK  120
VYLCPEPSCV HHDPSRALGD LTGIKKHYYR KHGEKKFKCE KCSKRYAVQS DWKAHSKTCG  180
TKEYRCDCGT IFSRRDSYIT HRAFCDALIQ ETARNPTVSF TAMAASAGGG GGRHGFYGGA  240
ASGSALSHNH FGNNSNSGFT PLAAGYNLNR SSSEKFENFV PQSTNPNPGP TNFLMQCSPN  300
QGLLAQNDQG LMNQHGLISL GDNINNNNNN NNLFNLGYFQ DNAKNSDQTI VPPLFPSGAD  360
NNDPSALLRG LTSSSSSSVV VNDFGDGDNG NFQGLMNSLA ATSDHQGRSG SSLFDLHFGN  420
NLSMGGSDRL TLDFLGVNGG IVSNVNGRGG RNGAPLDVDM KFSHPNDPFG KA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-32153219369Zinc finger protein JACKDAW
5b3h_F1e-32153219369Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00142DAPTransfer from AT1G14580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10007538m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531830.0AK353183.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-38-E19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006416997.10.0protein indeterminate-domain 6, chloroplastic isoform X1
RefseqXP_024008389.10.0protein indeterminate-domain 6, chloroplastic isoform X1
SwissprotQ8RWX70.0IDD6_ARATH; Protein indeterminate-domain 6, chloroplastic
TrEMBLE4MXD60.0E4MXD6_EUTHA; mRNA, clone: RTFL01-38-E19
TrEMBLV4KCA70.0V4KCA7_EUTSA; Uncharacterized protein
STRINGXP_006416997.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36781759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14580.20.0C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Bustillo-Avendaño E, et al.
    Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis.
    Plant Physiol., 2018. 176(2): p. 1709-1727
    [PMID:29233938]