PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10007221m | ||||||||
Common Name | EUTSA_v10007221mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | NAC | ||||||||
Protein Properties | Length: 570aa MW: 63581.1 Da PI: 4.6077 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 155.1 | 3e-48 | 19 | 145 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 +pGfrFhPtdeelv++yLk+k+ +k+l++ +vi vd+yk++P+ Lp + +k+++++w++F++r++ky++ r+ r t++gyWkatgkd+ ++ Thhalv10007221m 19 APGFRFHPTDEELVMYYLKRKICKKRLRV-NVIGVVDVYKMDPEALPgQsVLKTGDRQWFYFTPRNRKYPNAARSGRGTATGYWKATGKDRIIV 111 69***************************.99**************96347788999************************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ vglkktLvfy+grap+ge+tdWvmhey++ Thhalv10007221m 112 Y-NSRPVGLKKTLVFYRGRAPNGERTDWVMHEYTM 145 9.999****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 51.789 | 18 | 168 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 6.02E-55 | 19 | 168 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.7E-25 | 20 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0070301 | Biological Process | cellular response to hydrogen peroxide | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005789 | Cellular Component | endoplasmic reticulum membrane | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 570 aa Download sequence Send to blast |
MADSSSPADS CFKGGKFSAP GFRFHPTDEE LVMYYLKRKI CKKRLRVNVI GVVDVYKMDP 60 EALPGQSVLK TGDRQWFYFT PRNRKYPNAA RSGRGTATGY WKATGKDRII VYNSRPVGLK 120 KTLVFYRGRA PNGERTDWVM HEYTMDEEEL MRCKNVKDYY ALYKLFKKSG AGPKNGEEYG 180 APFQEEDWVD DDNEDGNEVA VPEEPVVRYE DPRRADGGRI FNPVNIRLDD IEELLREIPD 240 APGVPQRCIN GLAASIPQVN SEEELQSTLV NDSAKVFLQP QETGEFLPNG LPYKRPSSFE 300 SIEVTSAPKN ALVFEKEDYI EMDDLLIPEL RASETEKPAQ FLNHGEYGDF NDFDQLFHDV 360 SMSLDMEPIV QETSTGPSFL ADISSDQKQQ FVYQQFQDQN PENQLNNIMD PSLNQFTDDM 420 WFNADDQAIL FDQPQSISGA LASPSSGVIP GSTNPTVSIN PQDQEGGNDG GTSPFSSALW 480 AFMDSIPSTP ASACEGPLNR TYVRMSSFSR IRFSGKANGT PVTATTTSTI AKKQSRNRGF 540 LLLSVVGALC AIFWLFIATV RVSGRPVIS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-43 | 20 | 145 | 17 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Transcriptional activator that acts as positive regulator of AOX1A during mitochondrial dysfunction. Binds directly to AOX1A promoter. Mediates mitochondrial retrograde signaling. {ECO:0000269|PubMed:24045017}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00179 | DAP | Transfer from AT1G34190 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10007221m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold and drought stresses. {ECO:0000269|PubMed:17158162}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006396080.1 | 0.0 | NAC domain-containing protein 17 | ||||
Swissprot | Q9XIC5 | 0.0 | NAC17_ARATH; NAC domain-containing protein 17 | ||||
TrEMBL | V4MP13 | 0.0 | V4MP13_EUTSA; Uncharacterized protein | ||||
STRING | XP_006396080.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2812 | 26 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34190.1 | 0.0 | NAC domain containing protein 17 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10007221m |
Entrez Gene | 18991633 |