PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10007199m
Common NameEUTSA_v10007199mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB_related
Protein Properties Length: 577aa    MW: 64540.4 Da    PI: 9.0841
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10007199mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.53.1e-08473521348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E  +lv++v ++G g W+ I r        Rt  ++k++w+++l
  Thhalv10007199m 473 AWTLSEVIKLVEGVSRYGVGKWSEIKRLSFssyAYRTSVDLKDKWRNLL 521
                      7***************************999**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.123466525IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-12467527IPR009057Homeodomain-like
SuperFamilySSF466891.2E-15468527IPR009057Homeodomain-like
SMARTSM007171.2E-8470523IPR001005SANT/Myb domain
CDDcd116601.19E-19472522No hitNo description
PfamPF002491.1E-5473521IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MFGTVEDYGE MFQDNVVQTR GASLSSANQI GDPVVYKLVR SFVPLGDKFP YPTRLLNPGL  60
FQSETVEAYT ENLNSRLESK EELMYGSQMF FTLPDTNCQN SNQLPGNEGL VQSEVLLQEP  120
VRFPSNGCTM DQSMDVSQYS NATCSPKVPS ASKPGFSRDT GDKCLDNLSI KSLQETFRAT  180
FGRETTCKDK RWLKRRITMG LINSCVIPTT GLTVNDNKLI GGGQDNYNDT IDAYSKDTVD  240
EGRANCNDTP SSPDCRKGHS NDFQRSPVES FVDQYSGNED FEGELRSAKR VRKPTRRFIE  300
EISKVDGKQQ VNESLIPLKD QRSISAVSSG GRVVVTRMVS LAGSRIQVPY VSHVRRSRPR  360
ENIMALGEFH SSSWEVKTTP EESDLTLRQY QLNNDVNRVS GVKSVAGPVP KELAINHQSD  420
KDHSKPNLSD VNQDIMEPEH IDSSGNSSDD NHNTNRVDLP IMQSAIRRKH HRAWTLSEVI  480
KLVEGVSRYG VGKWSEIKRL SFSSYAYRTS VDLKDKWRNL LRASFAQTPS KRMGSLKKHG  540
SMAIPSQVLL QVRELAQKQS PAKKARMVKN SRNGFL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10007199m
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024008695.10.0uncharacterized protein LOC18993148
TrEMBLV4L5N60.0V4L5N6_EUTSA; Uncharacterized protein
STRINGXP_006416700.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43642649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17460.10.0TRF-like 3