PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10007062m
Common NameEUTSA_v10007062mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB_related
Protein Properties Length: 631aa    MW: 70155.2 Da    PI: 9.879
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10007062mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.52.6e-07526575147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Thhalv10007062m 526 RRPFSVAEVEALVQAVERLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 575
                      6789999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542367.05E-5344425IPR029071Ubiquitin-related domain
PROSITE profilePS5129414.864521580IPR017930Myb domain
SMARTSM007177.0E-7525578IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-10526576IPR009057Homeodomain-like
CDDcd116601.14E-16527577No hitNo description
SuperFamilySSF466892.36E-15527608IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 631 aa     Download sequence    Send to blast
MVLQKRLDYG FNGYEVPPTP RAARSPRKSA FKKKSENNQI SSFDLLAAVA GKLLLEGGGN  60
SSSSSNNASG DNEDQCAVKK EPLYGADQTV GEETDCDHHD NDPERRFFVS EILQKSHDME  120
TFNRSPSPPK DFHFGSTSGI TSDSSEKFGT QELEETKIDI GFSYRPAETS GKKSMLEGLN  180
CEPKLSRNVV ANDEHRIGSG FRKPIPPNPS VCSDDVNLLG RENDDAENFS DRYTTKSFRP  240
TLRVGDRRIR KVLASKFCKV SSKQKDTTVT NSDLDLKPGY YSKKHCLKSL RSERNYPIKK  300
RRYFDGYTAS QSQETVKNEG LSSSPPKASA FLSSIDRQKQ PAFQSRDSHV KLGIKSFRVP  360
ELFIEIPETA TVGSLKRTVL EAVTTILGGG LRIGVLVHGK KVRDDNKMLL QTGISLDSTL  420
SDTLGFCLEP NPPQISNKSL SPEDSNFVRP CNVPHTLTRC LPSLGKHAKP SNSVESDLES  480
KPSAPNRAKT VYSRALIPVS PLHVQALSVV PPRKPKRCEV AQRRIRRPFS VAEVEALVQA  540
VERLGTGRWR DVKLRAFDNA KHRTYVDLKD KWKTLVHTAR ISPQQRRGEP VPQELLDRVL  600
TAHAYWSQQQ GKQQLLEGEG PQKLETSLGL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A6e-575136154106Telomere binding protein TBP1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10007062m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195350.0AY519535.1 Arabidopsis thaliana MYB transcription factor (At1g07540) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006417794.10.0telomere repeat-binding protein 5 isoform X1
SwissprotQ6R0E30.0TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLV4L1H90.0V4L1H9_EUTSA; Uncharacterized protein
STRINGXP_006417794.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32402539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.10.0TRF-like 2