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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10006984m | ||||||||
Common Name | EUTSA_v10006984mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | FAR1 | ||||||||
Protein Properties | Length: 680aa MW: 77673.2 Da PI: 7.4473 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 63.5 | 5.9e-20 | 62 | 155 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +fY+++Ak++GFs+r+++++ + + t+r fvC + g++ ++ ++ k +r+r ++r+gC+a l+++k + + +w+vt + ++HnH+l Thhalv10006984m 62 EFYSTFAKRCGFSIRRHRTEGKdGIGKGLTRRYFVCHRAGNTPVKTLSEGKPQRNRRSSRCGCQAYLRISKITelgSTEWRVTGFANHHNHDLL 155 6**************999887735667799**************999999*********************9989999*************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.8E-16 | 62 | 155 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 9.2E-20 | 278 | 367 | IPR018289 | MULE transposase domain |
Pfam | PF04434 | 1.8E-8 | 553 | 587 | IPR007527 | Zinc finger, SWIM-type |
PROSITE profile | PS50966 | 9.742 | 556 | 589 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 9.2E-7 | 564 | 591 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 680 aa Download sequence Send to blast |
MSDDGGPLLL IYEDPSDHRS LSLDDASSTE ESPDGDNLSL EAINDVIPYI GQRFLTHDAA 60 YEFYSTFAKR CGFSIRRHRT EGKDGIGKGL TRRYFVCHRA GNTPVKTLSE GKPQRNRRSS 120 RCGCQAYLRI SKITELGSTE WRVTGFANHH NHDLLEPNQV RFLPAYRSIS DADKSRILMF 180 SKTGISVQQM MRLMELEKCV EPGFLPFTEK DVRNLLQSFK KLDPEDENID FLRMCQSIKE 240 KDPNFKFEFT LDANDKLENI AWSYASSIQS YEIFGDAVVF DTTHRLSAVE MPLGIWVGVN 300 NYGVPCFFGC VLLRDENLRS WSWALQAFIG FMNGKAPQTI LTDHNMCLKE AIDGEMPATK 360 HALCIWMVVG KFPSWFNAGL GERYNDWKAE FYRLYHLESV EEFEIGWRDM VNSFGLHTNR 420 HINNLYASRS LWSLPYLRSH FLAGMTLSGR SKAINAFIQR FLSAQTRLAH FVEQVAVAVD 480 FKDQATEQQT MQQNLQNISL KTGAPMESHA ASVLTPFAFS KLQEQLVLAA HYASFQMDDG 540 YLVRHHTKLD GGRKVYWVPQ EGIISCSCQL FEFSGFLCRH ALRVLSTGNC FQVPDRYLPL 600 RWRRISTTFS KTFRSHAEDH GERVQFLQNL VSTLVSESSK SKERLEIATE QTSILLSRIR 660 EQPISSLALR DISSVQRNF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10006984m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF424595 | 0.0 | AF424595.1 Arabidopsis thaliana At1g10240/F14N23_12 mRNA, complete cds. | |||
GenBank | BT000486 | 0.0 | BT000486.1 Arabidopsis thaliana unknown protein (At1g10240/F14N23_12) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006417485.1 | 0.0 | protein FAR1-RELATED SEQUENCE 11 | ||||
Refseq | XP_024007775.1 | 0.0 | protein FAR1-RELATED SEQUENCE 11 | ||||
Refseq | XP_024007776.1 | 0.0 | protein FAR1-RELATED SEQUENCE 11 | ||||
Swissprot | Q9SY66 | 0.0 | FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11 | ||||
TrEMBL | V4L7U0 | 0.0 | V4L7U0_EUTSA; Uncharacterized protein | ||||
STRING | XP_006417485.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1765 | 26 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10240.1 | 0.0 | FAR1-related sequence 11 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10006984m |
Entrez Gene | 18993854 |
Publications ? help Back to Top | |||
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