PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10006948m
Common NameEUTSA_v10006948mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family GRAS
Protein Properties Length: 712aa    MW: 81079.2 Da    PI: 5.4754
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10006948mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS343.92.6e-1053327082373
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfs 94 
                      ++lL+ cA+ +s+gd+  a+ lL ++++++sp gd+ qRla +f++AL+ rl++s+ ++ ++   + ++++++ ++ l+++k+f  +sP++++ 
  Thhalv10006948m 332 RTLLTLCAQSISAGDKITADDLLRQIRKQCSPLGDASQRLAYFFANALEVRLQGSTGTMIQSYyDSITSKKRTAAQILKSYKVFLSASPFMTLI 425
                      6799**************************************************77777776646777777779******************** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                      ++  N++Il+a++ ++ +HiiDf+i +G+QWp ++q +++ + gp +lRiTg++ p++g   +e++e tg+rL+++++++gvpfe+n++++k++
  Thhalv10006948m 426 YFFSNKMILDAAKDASVLHIIDFGILYGFQWPMFIQNISKSKTGPRKLRITGIELPQNGfrPTERIEDTGRRLTEYCKRFGVPFEYNAIASKNW 519
                      **********************************************************9******************************99*** PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279
                      e++++e+++++p+E+laVn vl+ ++l d +   e+ +rd++Lkl+++++P+v+  +  + + n++ F +rf eal +ys+lfd++ ++l+re+
  Thhalv10006948m 520 ETIRMEQFKIRPNEVLAVNTVLRFKNLRDVTPGEEDcPRDAFLKLIRDMNPDVFLSSTVNGSFNAPFFTTRFKEALFHYSSLFDMFGSTLSREN 613
                      ****************************9999999899******************************************************** PP

             GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSa 372
                       eri  E e+ gre++nv+aceg +r+er et+++W+ r+++aGFk+ p++ + +++ +  ++k +  + + ++++ +++++gWk+r L+s S+
  Thhalv10006948m 614 PERIHFEGEFYGREVMNVIACEGVDRVERPETYKQWQVRMMRAGFKQKPVEAELVESFREKMNKWGyHKDFVLDQDCNWFLQGWKGRILFSSSC 707
                      ****************************************************************999999************************ PP

             GRAS 373 W 373
                      W
  Thhalv10006948m 708 W 708
                      * PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.885305688IPR005202Transcription factor GRAS
PfamPF035149.1E-103332708IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 712 aa     Download sequence    Send to blast
MMESNFSRVV NGFEYYDVGI LPNPVPVPDF GFGVPSSSDF TDHQPSIWLP ATQDHQDHHH  60
HHHYSPPTDE IDSENTLLKY VNQILMEESF AEKQSMLYDS LALRQTEEML QQVISDSQQT  120
QPFIIPNSIT SSVDDYWSSN SNSSVPIETG ASSTESEVLY DHPLGDSGVV STQGSDMLRG  180
GGGFGQPANE ILVRSMFSDA ESVMQFKRGL EEASKFLPNT DQWIFNLEHE RKGVVSVSVK  240
EEKGLSSVTR SRKNHHEREE EEDLEETRSS KQSAVTVEDG KLTEFFDKVL LLDGQCDPQI  300
IEDGENVSSK ALQGNKKEGG RSRKKSQAVD FRTLLTLCAQ SISAGDKITA DDLLRQIRKQ  360
CSPLGDASQR LAYFFANALE VRLQGSTGTM IQSYYDSITS KKRTAAQILK SYKVFLSASP  420
FMTLIYFFSN KMILDAAKDA SVLHIIDFGI LYGFQWPMFI QNISKSKTGP RKLRITGIEL  480
PQNGFRPTER IEDTGRRLTE YCKRFGVPFE YNAIASKNWE TIRMEQFKIR PNEVLAVNTV  540
LRFKNLRDVT PGEEDCPRDA FLKLIRDMNP DVFLSSTVNG SFNAPFFTTR FKEALFHYSS  600
LFDMFGSTLS RENPERIHFE GEFYGREVMN VIACEGVDRV ERPETYKQWQ VRMMRAGFKQ  660
KPVEAELVES FREKMNKWGY HKDFVLDQDC NWFLQGWKGR ILFSSSCWLP S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-443317085374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10006948m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006417797.10.0scarecrow-like protein 31
SwissprotQ3EDH00.0SCL31_ARATH; Scarecrow-like protein 31
TrEMBLV4KEH50.0V4KEH5_EUTSA; Uncharacterized protein
STRINGXP_006417797.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM135111728
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07520.10.0GRAS family protein