PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10006632m
Common NameEUTSA_v10006632mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NF-X1
Protein Properties Length: 1091aa    MW: 120086 Da    PI: 8.2443
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10006632mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X121.84e-07311329119
         zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                      CG+H+C++ CH G+C+pC+
  Thhalv10006632m 311 CGRHQCERACHIGECDPCQ 329
                      ******************6 PP
2zf-NF-X116.32.1e-05375392118
         zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                      CG+H+C + CH+GpC+ C
  Thhalv10006632m 375 CGNHSCPEVCHPGPCGDC 392
                      ****************99 PP
3zf-NF-X121.74.5e-07433450118
         zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                      CG H C+++CH G+CppC
  Thhalv10006632m 433 CGLHNCSETCHAGDCPPC 450
                      ****************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.2E-6133203No hitNo description
PROSITE profilePS500168.965141202IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590144199IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500899.745144200IPR001841Zinc finger, RING-type
CDDcd060081.16E-4233294No hitNo description
SMARTSM004380.023256274IPR000967Zinc finger, NF-X1-type
PfamPF014228.1258273IPR000967Zinc finger, NF-X1-type
CDDcd060081.33E-11301349No hitNo description
PfamPF014221.7E-4311328IPR000967Zinc finger, NF-X1-type
SMARTSM004382.4E-4311330IPR000967Zinc finger, NF-X1-type
CDDcd060084.74E-8365407No hitNo description
PfamPF014222.7E-4375392IPR000967Zinc finger, NF-X1-type
SMARTSM004382.9E-4375394IPR000967Zinc finger, NF-X1-type
CDDcd060084.98E-14423471No hitNo description
PfamPF014227.1E-6433450IPR000967Zinc finger, NF-X1-type
SMARTSM004381.3E-5433452IPR000967Zinc finger, NF-X1-type
PfamPF0142219491502IPR000967Zinc finger, NF-X1-type
SMARTSM0043813491523IPR000967Zinc finger, NF-X1-type
CDDcd060083.54E-6521573No hitNo description
SMARTSM0043821531550IPR000967Zinc finger, NF-X1-type
SMARTSM0043817588606IPR000967Zinc finger, NF-X1-type
PfamPF01422160597605IPR000967Zinc finger, NF-X1-type
PfamPF014220.023641656IPR000967Zinc finger, NF-X1-type
SMARTSM004380.062641672IPR000967Zinc finger, NF-X1-type
SMARTSM0043812681702IPR000967Zinc finger, NF-X1-type
Gene3DG3DSA:3.30.70.3305.7E-4928973IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1091 aa     Download sequence    Send to blast
MSSQVRRDRR ERSRFTTPNA QKTWVPKETS STSVVVNETS FPLNTNTNSG SFDAGLHSNY  60
PNQRSSVLGP PPLSRQRRNH AARSVPENHQ RGRSRGRLGQ TVNKGKMPNK NRNGDIESTV  120
LTDPNLPQLV QEIQDKLMKS SIECMICYDM VRRSANIWSC SSCYSIFHLE CIKKWARAPT  180
SIDLLADKNQ GSNWRCPGCQ SVQLTSSKEI MYRCFCGKRK DPPSDPYLTP HSCGDPCRKP  240
LEKEFATGEM AKGNNCPHVC VLQCHPGPCP PCKAFVPPRS CPCGKKMIWT RCSERKSDLT  300
CEQSCGKLLN CGRHQCERAC HIGECDPCQV PVNASCFCKK TIENVLCGDM NVKGEVKAED  360
GVFSCNLNCE KDLECGNHSC PEVCHPGPCG DCDFRPSRIK TCYCGKTGLQ EERWSCLDPI  420
PSCSNICSKR LPCGLHNCSE TCHAGDCPPC LVQVRQKCRC GSTSRTVECY KTVSDMEEFI  480
CAKPCGRKKN CGRHRCNERC CPLLNHPKNA DLSDDSGLHL CQIPCGKRLR CEQHSCETLC  540
HCGHCHPCLE MIFTDLACAC GKTSIPPPLP CGTPVPSCQL LCSVPQPCGH SATHDYHFGD  600
CLPCSVPVEK KCIGGHVVLR NIPCGLKDIR CNKICGKTRR CGMHACARTC HPEPCGNGDQ  660
ESQAGLRVTC GQTCGAPRRD CRHTCAALCN PSRPCPDQRC EFPLKITCSC GRITATVPCD  720
AGGGSAAGFN GDSVYETSIL HKLPVPLQPV ELNGKRIPLG QRKLTCDEEC AKLERKRVLQ  780
DAFDITPPNL DPLHFGENST LTEIISDLYR RYPNWVLAVE ERCKFLVLGK ARGSTSSALK  840
LHIFCPMEKD KREAVRLIAE RWNLAVSNAG WEPKRFIVVY VTQKSKPPTR IIGVKGVVSA  900
GGPHSPAFDP LVDMDPRLVV SFLDLPREAN ISALVLRFGG ECELVWLNDK NALAVFHDPA  960
RAATAMRRLD HGSVYQGAVV FVQNPRQSPS LSNAWGIQDG SVKEVQRGNP WNKAVSNKSD  1020
ANSSTGGSVW KSTKDNKLIA PLGNRWSVLE RKKAVSLEPL AQTEGTNSSK AAGKQPEETQ  1080
VVDDWDKVCD *
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10006632m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006415358.10.0NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLV4MPY10.0V4MPY1_EUTSA; Uncharacterized protein
STRINGXP_006415358.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59552647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1