PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10006408m

Common Name

EUTSA_v10006408mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

NAC

Protein Properties

Length: 267aa MW: 30651 Da PI: 7.4106

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10006408m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	117.5	1.3e-36	49	173	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 pGfrF+Ptdeelv +yL++ +++ + +++v+iy+++P++L +++++ + +ew+f s+r + ++ gkr+nr+ + gyW+atg+ ++ ++ Thhalv10006408m 49 RPGFRFSPTDEELVLHYLEPFSKSRASSW--PVHHVNIYESNPQRLSAEYEKgNLTEWFFVSERTNMHKGGKRQNRSDNGGYWHATGTATKFKA 140 59****************999999766..79*********9655551555********************************99 PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +vg k +Lv+y+gr+p+g+kt+W+++ey l Thhalv10006408m 141 -GNGVVGNKASLVYYTGRQPNGVKTNWLIKEYWL 173 .9999*************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.72E-40	44	194	IPR003441	NAC domain
PROSITE profile	PS51005	38.267	48	194	IPR003441	NAC domain
Pfam	PF02365	2.9E-19	50	172	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MVPDQRNKGK EKCSPEPQTQ PQSLKHDPDM PSSSSSAPSY LSPRDHVCRP GFRFSPTDEE 60 LVLHYLEPFS KSRASSWPVH HVNIYESNPQ RLSAEYEKGN LTEWFFVSER TNMHKGGKRQ 120 NRSDNGGYWH ATGTATKFKA GNGVVGNKAS LVYYTGRQPN GVKTNWLIKE YWLDPSSSDD 180 NMTVGYALYK IYQTPVTKKK KKEEGVEALK EDPLDINEYQ QSYQPQFWPT TLDSHQCQPH 240 GIVYHQPQLL DTNEYHQPHQ PQPLDIN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-21	50	200	19	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-21	50	200	19	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-21	50	200	19	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-21	50	200	19	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-21	50	193	22	167	NAC domain-containing protein 19
3swm_B	2e-21	50	193	22	167	NAC domain-containing protein 19
3swm_C	2e-21	50	193	22	167	NAC domain-containing protein 19
3swm_D	2e-21	50	193	22	167	NAC domain-containing protein 19
3swp_A	2e-21	50	193	22	167	NAC domain-containing protein 19
3swp_B	2e-21	50	193	22	167	NAC domain-containing protein 19
3swp_C	2e-21	50	193	22	167	NAC domain-containing protein 19
3swp_D	2e-21	50	193	22	167	NAC domain-containing protein 19
4dul_A	2e-21	50	200	19	171	NAC domain-containing protein 19
4dul_B	2e-21	50	200	19	171	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10006408m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013745280.1	2e-62	NAC domain-containing protein 41
TrEMBL	V4LKZ6	0.0	V4LKZ6_EUTSA; Uncharacterized protein (Fragment)
STRING	XP_006402976.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2793	15	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56530.1	3e-60	NAC domain containing protein 64

Link Out ? help Back to Top
Phytozome	Thhalv10006408m
Entrez Gene	18020003